Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_L06
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g70310.1 68414.m08089 spermidine synthase 2 (SPDSYN2) / putre... 166 9e-42
At1g23820.2 68414.m03004 spermidine synthase 1 (SPDSYN1) / putre... 165 3e-41
At1g23820.1 68414.m03005 spermidine synthase 1 (SPDSYN1) / putre... 165 3e-41
At5g53120.3 68418.m06603 spermidine synthase, putative / putresc... 161 3e-40
At5g53120.2 68418.m06602 spermidine synthase, putative / putresc... 161 3e-40
At5g53120.1 68418.m06601 spermidine synthase, putative / putresc... 161 3e-40
At5g19530.1 68418.m02326 spermine/spermidine synthase family pro... 124 5e-29
At5g04610.1 68418.m00462 spermidine synthase-related / putrescin... 38 0.007
At2g16370.1 68415.m01873 bifunctional dihydrofolate reductase-th... 33 0.11
At5g22140.2 68418.m02577 pyridine nucleotide-disulphide oxidored... 31 0.77
At5g22140.1 68418.m02578 pyridine nucleotide-disulphide oxidored... 31 0.77
At4g14580.1 68417.m02244 CBL-interacting protein kinase 4 (CIPK4... 30 1.3
At2g29720.1 68415.m03612 monooxygenase family protein nearly ide... 30 1.3
At5g67030.2 68418.m08451 zeaxanthin epoxidase (ZEP) (ABA1) ident... 29 1.8
At5g67030.1 68418.m08450 zeaxanthin epoxidase (ZEP) (ABA1) ident... 29 1.8
At5g41590.1 68418.m05053 hypothetical protein contains Pfam prof... 29 1.8
At4g26870.1 68417.m03867 aspartyl-tRNA synthetase, putative / as... 29 1.8
At5g49130.1 68418.m06081 MATE efflux family protein contains Pfa... 29 2.4
At3g44190.1 68416.m04738 pyridine nucleotide-disulphide oxidored... 29 2.4
At4g34570.1 68417.m04912 bifunctional dihydrofolate reductase-th... 28 4.1
At4g13330.1 68417.m02083 expressed protein 28 4.1
At3g50950.2 68416.m05579 disease resistance protein (CC-NBS-LRR ... 28 4.1
At3g50950.1 68416.m05578 disease resistance protein (CC-NBS-LRR ... 28 4.1
At3g27325.1 68416.m03415 expressed protein 28 4.1
At2g31740.1 68415.m03876 expressed protein 28 4.1
At1g54320.1 68414.m06193 LEM3 (ligand-effect modulator 3) family... 28 4.1
At5g43940.1 68418.m05376 alcohol dehydrogenase class III / gluta... 28 5.4
At5g13000.1 68418.m01490 glycosyl transferase family 48 protein ... 27 7.2
At3g16470.1 68416.m02101 jacalin lectin family protein contains ... 27 7.2
At4g31900.1 68417.m04533 chromatin remodeling factor, putative s... 27 9.5
At2g18290.1 68415.m02132 anaphase-promoting complex, subunit 10 ... 27 9.5
At1g71020.1 68414.m08197 armadillo/beta-catenin repeat family pr... 27 9.5
>At1g70310.1 68414.m08089 spermidine synthase 2 (SPDSYN2) /
putrescine aminopropyltransferase 2 identical to
SP|O48661 Spermidine synthase 2 (EC 2.5.1.16)
(Putrescine aminopropyltransferase 2) (SPDSY 2)
{Arabidopsis thaliana}
Length = 340
Score = 166 bits (404), Expect = 9e-42
Identities = 73/153 (47%), Positives = 110/153 (71%)
Frame = +2
Query: 80 MNNLKNNWFTETCEMWPGGTFTFEVNEVLHSEQSEYQYIQVFDTTSYGRVLVLDGIIQCT 259
M+++ WF+E MWPG + +V ++L +S+YQ + VF + +YG+VLVLDG+IQ T
Sbjct: 44 MSSIIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQDVIVFQSATYGKVLVLDGVIQLT 103
Query: 260 QKDEFSYQEMISFLPLCCHKNPERVLIVGGGDGGVAREVAKHPKVKKIVQVEIDAKVIEV 439
++DE +YQEMI+ LPLC NP++VL++GGGDGGV REVA+H V++I EID V++V
Sbjct: 104 ERDECAYQEMITHLPLCSISNPKKVLVIGGGDGGVLREVARHSSVEQIDICEIDKMVVDV 163
Query: 440 SKKYLPFLAVGFESEKLELHVGDGFESLKEHSQ 538
+K+Y P +AVG+E ++ L +GDG LK ++
Sbjct: 164 AKQYFPNVAVGYEDPRVNLIIGDGVAFLKNAAE 196
>At1g23820.2 68414.m03004 spermidine synthase 1 (SPDSYN1) /
putrescine aminopropyltransferase 1 identical to
SP|Q9ZUB3 Spermidine synthase 1 (EC 2.5.1.16)
(Putrescine aminopropyltransferase 1) (SPDSY 1)
{Arabidopsis thaliana}
Length = 283
Score = 165 bits (400), Expect = 3e-41
Identities = 71/146 (48%), Positives = 106/146 (72%)
Frame = +2
Query: 101 WFTETCEMWPGGTFTFEVNEVLHSEQSEYQYIQVFDTTSYGRVLVLDGIIQCTQKDEFSY 280
WF+E MWPG + +V +VL +S+YQ + VF + +YG+VLVLDG+IQ T++DE +Y
Sbjct: 47 WFSEMSPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAY 106
Query: 281 QEMISFLPLCCHKNPERVLIVGGGDGGVAREVAKHPKVKKIVQVEIDAKVIEVSKKYLPF 460
QEMI+ LPLC NP++VL++GGGDGGV REVA+H +++I EID V++VSK++ P
Sbjct: 107 QEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPD 166
Query: 461 LAVGFESEKLELHVGDGFESLKEHSQ 538
+A+G+E ++ L +GDG LK ++
Sbjct: 167 VAIGYEDPRVNLVIGDGVAFLKNAAE 192
>At1g23820.1 68414.m03005 spermidine synthase 1 (SPDSYN1) /
putrescine aminopropyltransferase 1 identical to
SP|Q9ZUB3 Spermidine synthase 1 (EC 2.5.1.16)
(Putrescine aminopropyltransferase 1) (SPDSY 1)
{Arabidopsis thaliana}
Length = 334
Score = 165 bits (400), Expect = 3e-41
Identities = 71/146 (48%), Positives = 106/146 (72%)
Frame = +2
Query: 101 WFTETCEMWPGGTFTFEVNEVLHSEQSEYQYIQVFDTTSYGRVLVLDGIIQCTQKDEFSY 280
WF+E MWPG + +V +VL +S+YQ + VF + +YG+VLVLDG+IQ T++DE +Y
Sbjct: 47 WFSEMSPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAY 106
Query: 281 QEMISFLPLCCHKNPERVLIVGGGDGGVAREVAKHPKVKKIVQVEIDAKVIEVSKKYLPF 460
QEMI+ LPLC NP++VL++GGGDGGV REVA+H +++I EID V++VSK++ P
Sbjct: 107 QEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPD 166
Query: 461 LAVGFESEKLELHVGDGFESLKEHSQ 538
+A+G+E ++ L +GDG LK ++
Sbjct: 167 VAIGYEDPRVNLVIGDGVAFLKNAAE 192
>At5g53120.3 68418.m06603 spermidine synthase, putative / putrescine
aminopropyltransferase, putative similar to SP|O82147
Spermidine synthase (EC 2.5.1.16) (Putrescine
aminopropyltransferase) (SPDSY) {Coffea arabica};
contains Pfam profile PF01564: Spermine/spermidine
synthase
Length = 359
Score = 161 bits (391), Expect = 3e-40
Identities = 71/136 (52%), Positives = 103/136 (75%)
Frame = +2
Query: 122 MWPGGTFTFEVNEVLHSEQSEYQYIQVFDTTSYGRVLVLDGIIQCTQKDEFSYQEMISFL 301
MWPG + +V +VL ++S++Q + VF++ +YG+VLVLDGI+Q T+KDE +YQEMI+ L
Sbjct: 77 MWPGEAHSLKVEKVLFKDKSDFQEVLVFESATYGKVLVLDGIVQLTEKDECAYQEMIAHL 136
Query: 302 PLCCHKNPERVLIVGGGDGGVAREVAKHPKVKKIVQVEIDAKVIEVSKKYLPFLAVGFES 481
PLC +P+ VL+VGGGDGGV RE+++H V+ I EID VI+VSKK+ P LAVGF+
Sbjct: 137 PLCSISSPKNVLVVGGGDGGVLREISRHSSVEVIDICEIDKMVIDVSKKFFPELAVGFDD 196
Query: 482 EKLELHVGDGFESLKE 529
+++LH+GD E L++
Sbjct: 197 PRVQLHIGDAAEFLRK 212
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 552 IITDSSDPIGPGVSL 596
II DSSDP+GP ++L
Sbjct: 221 IIVDSSDPVGPALAL 235
>At5g53120.2 68418.m06602 spermidine synthase, putative / putrescine
aminopropyltransferase, putative similar to SP|O82147
Spermidine synthase (EC 2.5.1.16) (Putrescine
aminopropyltransferase) (SPDSY) {Coffea arabica};
contains Pfam profile PF01564: Spermine/spermidine
synthase
Length = 359
Score = 161 bits (391), Expect = 3e-40
Identities = 71/136 (52%), Positives = 103/136 (75%)
Frame = +2
Query: 122 MWPGGTFTFEVNEVLHSEQSEYQYIQVFDTTSYGRVLVLDGIIQCTQKDEFSYQEMISFL 301
MWPG + +V +VL ++S++Q + VF++ +YG+VLVLDGI+Q T+KDE +YQEMI+ L
Sbjct: 77 MWPGEAHSLKVEKVLFKDKSDFQEVLVFESATYGKVLVLDGIVQLTEKDECAYQEMIAHL 136
Query: 302 PLCCHKNPERVLIVGGGDGGVAREVAKHPKVKKIVQVEIDAKVIEVSKKYLPFLAVGFES 481
PLC +P+ VL+VGGGDGGV RE+++H V+ I EID VI+VSKK+ P LAVGF+
Sbjct: 137 PLCSISSPKNVLVVGGGDGGVLREISRHSSVEVIDICEIDKMVIDVSKKFFPELAVGFDD 196
Query: 482 EKLELHVGDGFESLKE 529
+++LH+GD E L++
Sbjct: 197 PRVQLHIGDAAEFLRK 212
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 552 IITDSSDPIGPGVSL 596
II DSSDP+GP ++L
Sbjct: 221 IIVDSSDPVGPALAL 235
>At5g53120.1 68418.m06601 spermidine synthase, putative / putrescine
aminopropyltransferase, putative similar to SP|O82147
Spermidine synthase (EC 2.5.1.16) (Putrescine
aminopropyltransferase) (SPDSY) {Coffea arabica};
contains Pfam profile PF01564: Spermine/spermidine
synthase
Length = 359
Score = 161 bits (391), Expect = 3e-40
Identities = 71/136 (52%), Positives = 103/136 (75%)
Frame = +2
Query: 122 MWPGGTFTFEVNEVLHSEQSEYQYIQVFDTTSYGRVLVLDGIIQCTQKDEFSYQEMISFL 301
MWPG + +V +VL ++S++Q + VF++ +YG+VLVLDGI+Q T+KDE +YQEMI+ L
Sbjct: 77 MWPGEAHSLKVEKVLFKDKSDFQEVLVFESATYGKVLVLDGIVQLTEKDECAYQEMIAHL 136
Query: 302 PLCCHKNPERVLIVGGGDGGVAREVAKHPKVKKIVQVEIDAKVIEVSKKYLPFLAVGFES 481
PLC +P+ VL+VGGGDGGV RE+++H V+ I EID VI+VSKK+ P LAVGF+
Sbjct: 137 PLCSISSPKNVLVVGGGDGGVLREISRHSSVEVIDICEIDKMVIDVSKKFFPELAVGFDD 196
Query: 482 EKLELHVGDGFESLKE 529
+++LH+GD E L++
Sbjct: 197 PRVQLHIGDAAEFLRK 212
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 552 IITDSSDPIGPGVSL 596
II DSSDP+GP ++L
Sbjct: 221 IIVDSSDPVGPALAL 235
>At5g19530.1 68418.m02326 spermine/spermidine synthase family
protein similar to SP|P09158 Spermidine synthase (EC
2.5.1.16) (Putrescine aminopropyltransferase)
{Escherichia coli}; contains Pfam profile PF01564:
Spermine/spermidine synthase
Length = 339
Score = 124 bits (299), Expect = 5e-29
Identities = 61/168 (36%), Positives = 103/168 (61%), Gaps = 1/168 (0%)
Frame = +2
Query: 50 YSAFIATGTIMNNLKN-NWFTETCEMWPGGTFTFEVNEVLHSEQSEYQYIQVFDTTSYGR 226
+ A T T+ +N ++ +W+ ET + ++F +N VLH SEYQ I + DT +G+
Sbjct: 17 HKATSPTQTLHSNQQDCHWYEETID--DDLKWSFALNSVLHQGTSEYQDIALLDTKRFGK 74
Query: 227 VLVLDGIIQCTQKDEFSYQEMISFLPLCCHKNPERVLIVGGGDGGVAREVAKHPKVKKIV 406
VLV+DG +Q ++DEF Y E + L H NP+ V I+GGG+G ARE+ KH ++K+V
Sbjct: 75 VLVIDGKMQSAERDEFIYHECLIHPALLFHPNPKTVFIMGGGEGSAAREILKHTTIEKVV 134
Query: 407 QVEIDAKVIEVSKKYLPFLAVGFESEKLELHVGDGFESLKEHSQEFDV 550
+ID +V++ +++L + F ++KLEL + D L++ ++FD+
Sbjct: 135 MCDIDQEVVDFCRRFLTVNSDAFCNKKLELVIKDAKAELEKREEKFDI 182
>At5g04610.1 68418.m00462 spermidine synthase-related / putrescine
aminopropyltransferase-related contains weak similarity
to Spermidine synthase 2 (EC 2.5.1.16) (Putrescine
aminopropyltransferase 2) (SPDSY 2) (Swiss-Prot:O48659)
[Hyoscyamus niger]
Length = 434
Score = 37.5 bits (83), Expect = 0.007
Identities = 24/79 (30%), Positives = 39/79 (49%)
Frame = +2
Query: 317 KNPERVLIVGGGDGGVAREVAKHPKVKKIVQVEIDAKVIEVSKKYLPFLAVGFESEKLEL 496
K+ + L +G G GG+ + + + VEID +V+ ++++Y G E +
Sbjct: 247 KSKPKALCIGVGGGGLLSFLRLQLGFE-VTGVEIDPEVLRIARQYF-----GLEESLARV 300
Query: 497 HVGDGFESLKEHSQEFDVD 553
HV DG E LK S+ D D
Sbjct: 301 HVEDGIEFLKRLSKSCDDD 319
>At2g16370.1 68415.m01873 bifunctional dihydrofolate
reductase-thymidylate synthase 1 / DHFR-TS (THY-1)
identical to GP:289193:L08593 [SP|Q05762]
Length = 519
Score = 33.5 bits (73), Expect = 0.11
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = +2
Query: 239 DGIIQCTQKDEFSYQEMISFLPLCCHKNPERVLIVGGGDGGVAREVAKHPKVKKIVQVEI 418
+ ++ C+ D S ++++ P C + ERV ++GGGD + RE P I EI
Sbjct: 104 ENVVTCSSVD--SALDLLAAPPYCL--SIERVFVIGGGD--ILREALNRPSCDAIHLTEI 157
Query: 419 DAKV 430
D V
Sbjct: 158 DTSV 161
>At5g22140.2 68418.m02577 pyridine nucleotide-disulphide
oxidoreductase family protein contains Pfam profile
PF00070 Pyridine nucleotide-disulphide oxidoreductase
domain
Length = 311
Score = 30.7 bits (66), Expect = 0.77
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +2
Query: 317 KNPERVLIVGGGDGGV--AREVAKHPKVKKIVQVEIDAKVIE-VSKKYLPFLAVGFESEK 487
K+ VLIVGGG GV A E+A KK+ V +++E V +K + ES+K
Sbjct: 78 KSSGSVLIVGGGPSGVELAAEIAVDFPEKKVTLVHKGPRLLEFVGQKAADKASDWLESKK 137
Query: 488 LEL 496
+E+
Sbjct: 138 VEV 140
>At5g22140.1 68418.m02578 pyridine nucleotide-disulphide
oxidoreductase family protein contains Pfam profile
PF00070 Pyridine nucleotide-disulphide oxidoreductase
domain
Length = 365
Score = 30.7 bits (66), Expect = 0.77
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +2
Query: 317 KNPERVLIVGGGDGGV--AREVAKHPKVKKIVQVEIDAKVIE-VSKKYLPFLAVGFESEK 487
K+ VLIVGGG GV A E+A KK+ V +++E V +K + ES+K
Sbjct: 132 KSSGSVLIVGGGPSGVELAAEIAVDFPEKKVTLVHKGPRLLEFVGQKAADKASDWLESKK 191
Query: 488 LEL 496
+E+
Sbjct: 192 VEV 194
>At4g14580.1 68417.m02244 CBL-interacting protein kinase 4 (CIPK4)
identical to CBL-interacting protein kinase 4
[Arabidopsis thaliana] gi|13249503|gb|AAG01367;
identical to cDNA calcineurin B-like (CBL) interacting
protein kinase 4 (CIPK4) GI:13249502
Length = 426
Score = 29.9 bits (64), Expect = 1.3
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
Frame = +2
Query: 8 SWLSRAVRVFLFCDYSAFIATGTIMNNLKNN-WFTETCEMWPGGTFTFEVNEVLHSEQSE 184
SW+S+ R ++ T + + WF ++ E+ + FE++ L E
Sbjct: 244 SWISKPARSIIYKLLDPNPETRMSIEAVMGTVWFQKSLEISEFQSSVFELDRFLEKEAKS 303
Query: 185 YQYIQVFDTTSYGRVLVLDGIIQCTQKDEFSYQEMIS 295
I FD S L L G+ + ++ E + +S
Sbjct: 304 SNAITAFDLISLSSGLDLSGLFERRKRKEKRFTARVS 340
>At2g29720.1 68415.m03612 monooxygenase family protein nearly
identical to CTF2B [GI:4164578][Plant Physiol. 119, 364
(1999), PGR99-008]
Length = 427
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2
Query: 326 ERVLIVGGGDGGVAREVAKH 385
E+V+IVGGG GG+A VA H
Sbjct: 43 EKVVIVGGGIGGLATAVALH 62
>At5g67030.2 68418.m08451 zeaxanthin epoxidase (ZEP) (ABA1)
identical to GI:9857296 AtABA1; controls Pfam profiles
PF01360: Monooxygenase and PF00498: FHA domain;
identical to cDNA AtABA1, GI:9857295
Length = 610
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 317 KNPERVLIVGGGDGGVAREVAKHPKVKKIVQVEIDAKVIEVSKKY 451
K RVL+ GGG GG+ +A K ++ E D I KY
Sbjct: 78 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKY 122
>At5g67030.1 68418.m08450 zeaxanthin epoxidase (ZEP) (ABA1)
identical to GI:9857296 AtABA1; controls Pfam profiles
PF01360: Monooxygenase and PF00498: FHA domain;
identical to cDNA AtABA1, GI:9857295
Length = 667
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 317 KNPERVLIVGGGDGGVAREVAKHPKVKKIVQVEIDAKVIEVSKKY 451
K RVL+ GGG GG+ +A K ++ E D I KY
Sbjct: 78 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKY 122
>At5g41590.1 68418.m05053 hypothetical protein contains Pfam profile
PF04525: Protein of unknown function (DUF567)
Length = 221
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 398 KIVQVEIDAKVIEVSKKYLPFLAVGFESEKLELHVGDGFES 520
KIV V ++ V+E+ +K + V F S+ +L V GF++
Sbjct: 166 KIVHVPLNKTVVEIKRKEVRTKGVRFGSDVFDLVVNPGFDT 206
>At4g26870.1 68417.m03867 aspartyl-tRNA synthetase, putative /
aspartate--tRNA ligase, putative simialr to
aspartate-tRNA ligase (EC 6.1.1.12) from Drosophila
melanogaster GI:4512034, Homo sapiens SP|P14868, Rattus
norvegicus SP|P15178; contains Pfam profile PF00152 tRNA
synthetases class II (D, K and N)
Length = 532
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 425 KVIEVSKKYLPFLAVGFESEKLELHVGDGFESLKEHSQEFD 547
K +E +K PF ++ F + L L +G + LKE +E D
Sbjct: 354 KELESVRKQYPFQSLKFLPQTLRLTFAEGIQMLKEAGEEVD 394
>At5g49130.1 68418.m06081 MATE efflux family protein contains Pfam
profile PF01554: MatE Uncharacterized membrane protein
family
Length = 502
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 157 IYLKCKCTTWPHLTC 113
IYL+CK TTWP + C
Sbjct: 168 IYLRCKGTTWPLMWC 182
>At3g44190.1 68416.m04738 pyridine nucleotide-disulphide
oxidoreductase family protein low similarity to
dihydrolipoamide dehydrogenase from Clostridium magnum
[GI:472330]; contains Pfam profile PF00070 Pyridine
nucleotide-disulphide oxidoreductase domain
Length = 367
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 317 KNPERVLIVGGGDGGV--AREVAKHPKVKKIVQVEIDAKVIE 436
K+ E +LIVGGG GV A E+A KK+ V +++E
Sbjct: 132 KSSESILIVGGGPSGVELAAEIAVDFPEKKVTIVHNGPRLLE 173
>At4g34570.1 68417.m04912 bifunctional dihydrofolate
reductase-thymidylate synthase 2 / DHFR-TS (THY-2)
identical to SP|Q05763
Length = 565
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 326 ERVLIVGGGDGGVAREVAKHPKVKKIVQVEIDAKV 430
E+V ++GGGD + RE P + I EID +
Sbjct: 173 EKVFVIGGGD--ILREALNKPSCEAIHITEIDTSI 205
>At4g13330.1 68417.m02083 expressed protein
Length = 428
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 329 RVLIVGGGDGGVAREVAKHPKVKKIVQVEIDAKVIEVSKKYLPFLA 466
RVL +G G G + +AKH + VE+D VI S + + F A
Sbjct: 187 RVLCIGHGGGSLPLFIAKHILGAVVDIVELDPLVISESVRAMGFPA 232
>At3g50950.2 68416.m05579 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 852
Score = 28.3 bits (60), Expect = 4.1
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Frame = +2
Query: 89 LKNNWFTETCEMWPGGTFTFEVNEVLHSEQSEYQYIQVFDTTSYGRV-------LVLDGI 247
L + W E MW G E E S + I+V D T G + +V D +
Sbjct: 436 LVHGWIGEGFVMWRNGRSATESGEDCFSGLTNRCLIEVVDKTYSGTIITCKIHDMVRDLV 495
Query: 248 IQCTQKDEFSYQE 286
I +KD FS E
Sbjct: 496 IDIAKKDSFSNPE 508
>At3g50950.1 68416.m05578 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 852
Score = 28.3 bits (60), Expect = 4.1
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Frame = +2
Query: 89 LKNNWFTETCEMWPGGTFTFEVNEVLHSEQSEYQYIQVFDTTSYGRV-------LVLDGI 247
L + W E MW G E E S + I+V D T G + +V D +
Sbjct: 436 LVHGWIGEGFVMWRNGRSATESGEDCFSGLTNRCLIEVVDKTYSGTIITCKIHDMVRDLV 495
Query: 248 IQCTQKDEFSYQE 286
I +KD FS E
Sbjct: 496 IDIAKKDSFSNPE 508
>At3g27325.1 68416.m03415 expressed protein
Length = 1048
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 317 KNPERVLIVGGGDGG-VAREVAKHPKVKK 400
K P V++VG GG VAR A HP+++K
Sbjct: 212 KLPHDVILVGHSMGGFVARAAAVHPRLRK 240
>At2g31740.1 68415.m03876 expressed protein
Length = 760
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +2
Query: 401 IVQVEIDAKVIEVSKKYLPFLAVGFESEKLELHVGDGFESLKE 529
I VE+D ++ V K Y F ++++L++H+ DG + +++
Sbjct: 561 IEAVELDPVMLSVGKDYFGFT----QNDRLKVHIADGIKFIRD 599
>At1g54320.1 68414.m06193 LEM3 (ligand-effect modulator 3) family
protein / CDC50 family protein Similar to GI:11994416;
GI:4966357; GI:4835763; GI:9757735 from [Arabidopsis
thaliana]
Length = 349
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 344 GGGDGGVAREVAKHPKVKKIVQVEIDA 424
G GD AR+ +K PK K Q E+ A
Sbjct: 14 GSGDSSAARKNSKRPKYSKFTQQELPA 40
>At5g43940.1 68418.m05376 alcohol dehydrogenase class III /
glutathione-dependent formaldehyde dehydrogenase /
GSH-FDH (ADHIII) identical to gi:1143388
Length = 379
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 332 VLIVGGGDGGVA-REVAKHPKVKKIVQVEIDAKVIEVSKKY 451
V I G G G+A E AK +I+ ++ID+K E +KK+
Sbjct: 198 VAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKF 238
>At5g13000.1 68418.m01490 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1889
Score = 27.5 bits (58), Expect = 7.2
Identities = 20/76 (26%), Positives = 34/76 (44%)
Frame = +2
Query: 275 SYQEMISFLPLCCHKNPERVLIVGGGDGGVAREVAKHPKVKKIVQVEIDAKVIEVSKKYL 454
S+ M SF LC + +I+ DGG V KK++ V I A ++++ + L
Sbjct: 497 SFDRMWSFYILCL-----QAMIIMAWDGGQPSSVFGADVFKKVLSVFITAAIMKLGQAVL 551
Query: 455 PFLAVGFESEKLELHV 502
+ + + LHV
Sbjct: 552 DVILNFKAHQSMTLHV 567
>At3g16470.1 68416.m02101 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase-binding protein homolog
[Arabidopsis thaliana] GI:2997767
Length = 451
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 347 GGDGGVAREVAKHPKVKKIVQVEIDAKVIEVSKKY 451
GGDGGVA + H VKKI + D+ V Y
Sbjct: 313 GGDGGVAWDDGVHDSVKKIYVGQGDSCVTYFKADY 347
>At4g31900.1 68417.m04533 chromatin remodeling factor, putative strong
similarity to chromatin remodeling factor CHD3 (PICKLE)
[Arabidopsis thaliana] GI:6478518; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1202
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 531 CSFKDSNPSPTCNSNFSLSKPTAKNGKY 448
C F D++P+ SN+ +SK +NG +
Sbjct: 984 CQFLDNHPTAPVFSNYVISKYNLRNGAF 1011
>At2g18290.1 68415.m02132 anaphase-promoting complex, subunit 10
family / APC10 family contains Pfam PF03256:
Anaphase-promoting complex, subunit 10 (APC10) domain;
similar to anaphase promoting complex subunit APC10
(GI:6463666) [Homo sapiens]
Length = 192
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +2
Query: 401 IVQVEIDAKV-IEVSKKYLPF-LAVGFESEKLELHVGDGFESLKE 529
++ ++ KV +++ Y+ F L + K+ + GDGF +LKE
Sbjct: 68 LINIQFQKKVKLQLVVLYVDFKLDESYTPSKISIRAGDGFHNLKE 112
>At1g71020.1 68414.m08197 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 628
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 212 TSYGRVLVLDGIIQCTQKDEFSYQEMISFLPLC-CHKNPERVLIVG 346
T+ R + +I C QKD+ +E + + LC C ++ E+++ +G
Sbjct: 543 TAILRANAIPPLIDCLQKDQPRNRENAAAILLCLCKRDTEKLISIG 588
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,904,859
Number of Sequences: 28952
Number of extensions: 261890
Number of successful extensions: 803
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -