Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_L04
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)              74   1e-13
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              71   1e-12
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              64   1e-10
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   6e-08
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              49   4e-06
SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)        38   0.007
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.12 
SB_20016| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_605| Best HMM Match : Calx-beta (HMM E-Value=0)                     31   1.1  
SB_20930| Best HMM Match : F5_F8_type_C (HMM E-Value=5.2e-08)          28   5.8  
SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)           28   7.7  

>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 63/220 (28%), Positives = 98/220 (44%), Gaps = 8/220 (3%)
 Frame = +2

Query: 11  RESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKR 190
           R    + LP D++P L  CTH++Y  A I   T K+ +   N D       Y+ I +LK 
Sbjct: 411 RPDPVKFLPKDIDPLL--CTHIVYAFAKIDPATNKIGTYEWNDD-----RLYKEINDLKL 463

Query: 191 QFPQLRVFLTVGGDDDTEDP-QKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 367
           + P L+  L VGG +    P   ++ ++ S   RT F +S L L+++Y FDG DL W+ P
Sbjct: 464 KNPSLKTLLAVGGWNHESGPVSPFSQMVASKSNRTTFISSLLQLSDKYDFDGFDLDWEYP 523

Query: 368 KRKPKKIRSSIGSFWHSIKKTFGTTPVDDKESEHREGFTALVREM------KQALNVKPN 529
             +                   G +P  DK+      FT L  EM      K A   KP 
Sbjct: 524 ASR-------------------GNSPPQDKQH-----FTILCEEMLDAFKRKAADTDKPR 559

Query: 530 MQLVISV-LPNVNCSIYFDVPSIINLVDIVNIQAFDYYTP 646
           M L  +V   +      ++V  +  ++D +N+  +D + P
Sbjct: 560 MLLTAAVSAGHGTVDAAYEVHKLAGILDWINLMTYDLHGP 599


>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 829

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 41/136 (30%), Positives = 65/136 (47%)
 Frame = +2

Query: 2   SYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITN 181
           S  R       P D++P L  CTH+L+  A +   T+K+    EN      H  Y+ I  
Sbjct: 31  SQYRPKGGTFWPEDIDPFL--CTHILFSFAKVNQTTHKLDIYEEN-----DHELYQRINA 83

Query: 182 LKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQ 361
           LK+  P+L+  + VGG    E    ++ ++ + + R  F  SA+     +GFDG+DL W+
Sbjct: 84  LKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTHGFDGLDLDWE 143

Query: 362 LPKRKPKKIRSSIGSF 409
            P  +    +S  G F
Sbjct: 144 YPGMRGGSPKSDKGRF 159



 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 39/136 (28%), Positives = 64/136 (47%)
 Frame = +2

Query: 2   SYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITN 181
           S  R       P D++P L  CTH+++  + +   T+ M    +N D D     Y+ I  
Sbjct: 416 SQYRPKGGTFWPEDIDPHL--CTHVIHSFSKVNLTTHVMEKYEKN-DFDL----YKRINA 468

Query: 182 LKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQ 361
           LK+  P+L+  + VGG    E    ++ ++ + + R  F  SA+      GFDG+DL W+
Sbjct: 469 LKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTNGFDGLDLDWE 528

Query: 362 LPKRKPKKIRSSIGSF 409
            P  +    +S  G F
Sbjct: 529 YPGMRGGSPKSDKGRF 544


>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 270

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 1/123 (0%)
 Frame = +2

Query: 2   SYIRESQARMLPTDLEPALSFCTHLLYKSAGI-QADTYKMVSLNENLDIDRAHANYRAIT 178
           S  R+ +A+  P D+ PA   CTHL+Y  A I Q +   M   N+    D+ +  + A  
Sbjct: 29  SQYRQGRAKFWPEDI-PA-DLCTHLMYSFAKINQKNELAMYEWND----DKLYPRFNA-- 80

Query: 179 NLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSW 358
            LK++ P+L+  L VGG +       ++ ++++   R  F +S + +   +GFDG+DL W
Sbjct: 81  -LKQKNPELKTLLAVGGWNHENANSPFSRMVKTAATRKVFIDSVIRILRTWGFDGLDLDW 139

Query: 359 QLP 367
           + P
Sbjct: 140 EYP 142


>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 33/115 (28%), Positives = 57/115 (49%)
 Frame = +2

Query: 23  ARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKRQFPQ 202
           A+  P +++P+L  CTH++Y  A + AD  K+     N       A Y+ + +LK     
Sbjct: 38  AKYTPDNIDPSL--CTHIVYAFAKMNADNSKLAMFEWN-----DAAMYKKVNDLKSS-SN 89

Query: 203 LRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 367
           ++  L VGG +    P  +  ++ +   R  F + A+L    + FDG+DL W+ P
Sbjct: 90  MKTLLAVGGWNMGSGP--FQDMVSTASRRKIFIDDAILFLRNHMFDGLDLDWEYP 142


>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 569

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 20/68 (29%), Positives = 37/68 (54%)
 Frame = +2

Query: 164 YRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDG 343
           Y+   +LK + P L+  L VGG +       ++ ++ +  +R  F +S++ +  Q+ FDG
Sbjct: 187 YKEFNDLKLKNPGLKTLLAVGGWNHENYKSPFSRMVRTAASRKVFIDSSIAMLRQWNFDG 246

Query: 344 IDLSWQLP 367
            DL W+ P
Sbjct: 247 FDLDWEYP 254


>SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)
          Length = 561

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 19/68 (27%), Positives = 34/68 (50%)
 Frame = +2

Query: 164 YRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDG 343
           Y+ + +LK     ++  L VGG +    P  +  ++ +   R  F + A+L    + FDG
Sbjct: 2   YKKVNDLKSS-SNMKTLLAVGGWNMGSGP--FQDMVSTASRRKIFIDDAILFLRNHMFDG 58

Query: 344 IDLSWQLP 367
           +DL W+ P
Sbjct: 59  LDLDWEYP 66


>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 19/50 (38%), Positives = 31/50 (62%)
 Frame = +2

Query: 446 VDDKESEHREGFTALVREMKQALNVKPNMQLVISVLPNVNCSIYFDVPSI 595
           +DDK++E +E FT  V      + + PN ++VI++L N + SI F V S+
Sbjct: 703 LDDKKNEPQETFTVTVSSADSNIEISPN-EVVITILDN-DVSIGFMVTSV 750



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +2

Query: 446  VDDKESEHREGFTALVREMKQALNVKPNMQLVISVLPNVNCSIYFDVPSI 595
            +DDKE E  E FT  +    + +NVKP     + +  N + SI F++ ++
Sbjct: 2157 IDDKEIEDLEAFTVTLSSDDKRVNVKPETG-TVKITDN-DASIGFELATV 2204


>SB_20016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 902

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
 Frame = -1

Query: 564 FTFGKTLITNCILGFTLSACFISRTRAVKPSLCSDSLS---STGVVP-NVFLMLCQKDPI 397
           +TFG   + +C  G+T   C I++ + V PSL +  +     T  VP +  ++ C K   
Sbjct: 291 YTFGNETVCDCNPGYTGQRCTINK-QCVVPSLNTGEIGGKYETERVPGSKMVLFCNKG-- 347

Query: 396 LERIFFGFLFGNCQDRSIPSKPYCS 322
              I   + FG C D S  S PY S
Sbjct: 348 ---ISLSWRFGVCVDGS--SSPYWS 367


>SB_605| Best HMM Match : Calx-beta (HMM E-Value=0)
          Length = 1958

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +2

Query: 425  KTFGTTPVDDKESEHREGFTALVREMKQALNVKPNMQLVISVLPNVNCSIYFDVPSI 595
            K F    +DD   E+ E F  +       + V P++  V  V+ + +  I FDVPSI
Sbjct: 950  KDFVIALIDDDVVENPEKFAVVFSTDDPRVTVDPSIPFVTVVITDNDAMIGFDVPSI 1006


>SB_20930| Best HMM Match : F5_F8_type_C (HMM E-Value=5.2e-08)
          Length = 172

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = -1

Query: 426 FLMLCQKDPILERIFFGFLFGNCQDRSIPSKPYCSARRRAELVKAVRACGDSNKRLYFCG 247
           +L    +D   E++F G  +G          P+  AR    +VK+V      +  +Y C 
Sbjct: 90  YLPYLDEDGTKEKVFNG-AWGRYLAFKRRIYPHVFARYIRIIVKSVFRSASIHVEIYGCV 148

Query: 246 SSVSSSPPTVKN 211
           S +SSSPP  +N
Sbjct: 149 SRLSSSPPPREN 160


>SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)
          Length = 1301

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 443  PVDDKESEHREGFTALVREM 502
            P DDK +E R  FT+L++EM
Sbjct: 1066 PEDDKPAEQRMSFTSLLKEM 1085


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,392,784
Number of Sequences: 59808
Number of extensions: 389447
Number of successful extensions: 1295
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1292
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)