Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_L04
(657 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein si... 59 2e-09
At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si... 56 2e-08
At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si... 48 7e-06
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si... 46 2e-05
At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein si... 44 9e-05
At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein si... 38 0.006
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si... 34 0.072
At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein si... 33 0.13
At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein si... 32 0.29
At1g67790.1 68414.m07736 expressed protein 30 1.2
At2g22650.1 68415.m02684 FAD-dependent oxidoreductase family pro... 30 1.6
At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR... 29 2.1
At4g18010.2 68417.m02680 inositol polyphosphate 5-phosphatase II... 29 2.7
At1g23270.1 68414.m02911 hypothetical protein 29 2.7
At5g42390.1 68418.m05161 metalloendopeptidase identical to chlor... 29 3.6
At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to SP|P1... 28 4.8
At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger) fa... 28 4.8
At3g26920.1 68416.m03368 F-box family protein contains F-box dom... 28 4.8
At2g39720.1 68415.m04874 zinc finger (C3HC4-type RING finger) fa... 28 4.8
At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger) fa... 28 4.8
At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive eff... 28 4.8
At4g15075.1 68417.m02316 hypothetical protein 28 6.3
At1g13540.1 68414.m01587 expressed protein 28 6.3
At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger) fa... 27 8.3
At5g52520.1 68418.m06516 tRNA synthetase class II (G, H, P and S... 27 8.3
At3g27220.1 68416.m03403 kelch repeat-containing protein contain... 27 8.3
At2g46160.1 68415.m05740 zinc finger (C3HC4-type RING finger) fa... 27 8.3
>At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 398
Score = 59.3 bits (137), Expect = 2e-09
Identities = 49/204 (24%), Positives = 96/204 (47%), Gaps = 1/204 (0%)
Frame = +2
Query: 38 TDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITN-LKRQFPQLRVF 214
TD++ +L THL A ++A++Y++ N A + A T ++++ P ++
Sbjct: 21 TDIDSSLF--THLFCTFADLEAESYEITIATWN------QAPFHAFTETVQQRNPHVKTL 72
Query: 215 LTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLPKRKPKKIRS 394
L++GG + +D + + +P +R +F S + +A YGF G+DL W+ P+ +
Sbjct: 73 LSIGGGNADKDA--FASMASNPDSRASFIQSTITVARSYGFHGLDLDWEYPRNE-----E 125
Query: 395 SIGSFWHSIKKTFGTTPVDDKESEHREGFTALVREMKQALNVKPNMQLVISVLPNVNCSI 574
+ F +++ + S G TAL+ + A+ N Q +
Sbjct: 126 EMYDFGKLLEEWRSAVEAESNSS----GTTALI--LTAAVYYSSNYQ-----------GV 168
Query: 575 YFDVPSIINLVDIVNIQAFDYYTP 646
+ V +I N +D +N+ A+D+Y P
Sbjct: 169 PYPVLAISNSLDWINLMAYDFYGP 192
>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 379
Score = 56.4 bits (130), Expect = 2e-08
Identities = 52/205 (25%), Positives = 94/205 (45%), Gaps = 2/205 (0%)
Frame = +2
Query: 38 TDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITN-LKRQFPQLRVF 214
TD++ +L THL A + + T ++ + N + T ++R+ P ++
Sbjct: 42 TDIDSSLF--THLFCAFADLNSQTNQVTVSSAN------QPKFSTFTQTVQRRNPSVKTL 93
Query: 215 LTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLPKRKPKKIRS 394
L++GG D Y + +P +R +F +S++ +A YGF G+DL W+ P +
Sbjct: 94 LSIGGG--IADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYPSSATE---- 147
Query: 395 SIGSFWHSIKKTFGTTPVDDKESEHREGFTALVREMKQALNVKPNMQLVISVLPNVN-CS 571
FGT RE +A+V E + KP + L +V + N S
Sbjct: 148 ---------MTNFGTL--------LREWRSAVVAEASS--SGKPRLLLAAAVFYSNNYYS 188
Query: 572 IYFDVPSIINLVDIVNIQAFDYYTP 646
+ + V ++ + +D VN+ A+D+Y P
Sbjct: 189 VLYPVSAVASSLDWVNLMAYDFYGP 213
>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 363
Score = 47.6 bits (108), Expect = 7e-06
Identities = 29/101 (28%), Positives = 52/101 (51%)
Frame = +2
Query: 68 THLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDTED 247
THL A + T +V + ++ +N+ I +K++ P ++ L++GG + D
Sbjct: 39 THLFCAFADLDPQTNSVVVSGAH---EQEFSNFTKI--VKKKNPHVQTLLSIGGRN--AD 91
Query: 248 PQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLPK 370
+ + +P +R +F SA+ A Y FDG+DL W+ PK
Sbjct: 92 KSAFASMASNPTSRKSFIWSAISSARYYRFDGLDLVWKYPK 132
>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 366
Score = 46.4 bits (105), Expect = 2e-05
Identities = 50/196 (25%), Positives = 89/196 (45%), Gaps = 2/196 (1%)
Frame = +2
Query: 59 SFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITN-LKRQFPQLRVFLTVGGDD 235
S THL A I TY+++ + N + T ++R+ P ++ L++GGD
Sbjct: 45 SLFTHLFCAFADINTLTYQVIVSSRN------KPKFSTFTQTVRRRNPTVKTLLSIGGDF 98
Query: 236 DTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLPKRKPKKIRSSIGSFWH 415
+ + +P +R F +S++ LA GF G+DL+W+ P SI
Sbjct: 99 TYNFA--FASMASNPTSRKLFISSSIKLARSCGFHGLDLNWKYP---------SI----- 142
Query: 416 SIKKTFGTTPVDDKESEHREGFTALVREMKQALNVKPNMQLVISVLPNVN-CSIYFDVPS 592
TT +D+ RE A+ E + + KP + L +V + + S+ V +
Sbjct: 143 -------TTEMDNFGKLLREWRLAVEAEARS--SGKPRLLLTAAVFYSYSYYSVLHPVNA 193
Query: 593 IINLVDIVNIQAFDYY 640
+ + +D VN+ A+D+Y
Sbjct: 194 VADSLDWVNLVAYDFY 209
>At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 332
Score = 44.0 bits (99), Expect = 9e-05
Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Frame = +2
Query: 14 ESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHAN-YRAITN-LK 187
E+Q + + P+ F THL A + A+++K+ + +AH + T +K
Sbjct: 24 ETQDPITSAETIPSALF-THLFCAFADLDANSHKVF-------VSQAHEFIFSTFTETVK 75
Query: 188 RQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 367
+ PQ++ L++GG + + + + Q+R F +S + +A GF G+DL+W+ P
Sbjct: 76 IRNPQVKTLLSIGGKNANNSA--FASMASNHQSRKTFIDSWIFIARSNGFHGLDLAWEYP 133
>At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 261
Score = 37.9 bits (84), Expect = 0.006
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 266 LLESPQARTAFTNSALLLAEQYGFDGIDLSWQLPK 370
+ S R +F S + +A YGFDG+DL W+ P+
Sbjct: 1 MASSSYGRKSFILSTISIARSYGFDGLDLDWEYPR 35
>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 365
Score = 34.3 bits (75), Expect = 0.072
Identities = 17/62 (27%), Positives = 34/62 (54%)
Frame = +2
Query: 182 LKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQ 361
+K + ++ L++GG D D + + + R AF +S++ +A + F G+DL+W+
Sbjct: 79 VKEKNTDVQTLLSIGGKD--ADKAVLASMASNSKNRKAFIDSSIDIARKKDFYGLDLAWE 136
Query: 362 LP 367
P
Sbjct: 137 YP 138
>At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 362
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/62 (27%), Positives = 34/62 (54%)
Frame = +2
Query: 182 LKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQ 361
+K + ++ L++GG D D + + + R AF +S++ +A + F G+DL+W+
Sbjct: 71 VKDKNTDVQTLLSIGGKD--ADKAVLASMASNSKNRKAFIDSSIDIARKKDFYGLDLAWE 128
Query: 362 LP 367
P
Sbjct: 129 YP 130
>At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 289
Score = 32.3 bits (70), Expect = 0.29
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +2
Query: 266 LLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 367
++ + +R +F +S++ +A GF G+DL+W+ P
Sbjct: 79 IVSNRTSRESFISSSISIARSLGFYGLDLAWEYP 112
>At1g67790.1 68414.m07736 expressed protein
Length = 576
Score = 30.3 bits (65), Expect = 1.2
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Frame = -1
Query: 570 EQFTFGKTLITNCILGFTLSACFISRTRAVKPSL-C---------SDSLSSTGVVPNVFL 421
E+ F + + N ILG TLS +++ R VK +L C + +S T V V L
Sbjct: 182 EKIPFKQAKLDNNILGETLSNIYLTTYRVVKSALTCMQQIPYFKQTQQISITEVQDKVTL 241
Query: 420 MLCQKDPILERIFF 379
+L K P+ E +FF
Sbjct: 242 LLLSKPPV-EPLFF 254
>At2g22650.1 68415.m02684 FAD-dependent oxidoreductase family
protein
Length = 420
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 332 GFDGIDLSWQLPKRKPKKIRSSI 400
GF GI ++W L K PK++R S+
Sbjct: 30 GFAGISVAWHLLKESPKELRLSV 52
>At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1036
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 60 RSAPICCTNLPASKLTHIKWFHSM 131
RS PIC T P+S +H KW H +
Sbjct: 13 RSCPICATPFPSSSSSH-KWTHQV 35
>At4g18010.2 68417.m02680 inositol polyphosphate 5-phosphatase II
(IP5PII) nearly identical to inositol polyphosphate
5-phosphatase II [Arabidopsis thaliana] GI:10444263
isoform contains an AT-acceptor splice site at intron 6
Length = 613
Score = 29.1 bits (62), Expect = 2.7
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 9/140 (6%)
Frame = +2
Query: 11 RESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKR 190
R A P + A S +H++ ++ + AD ++ NE +D A + N
Sbjct: 201 RSHSAPSSPILAQEANSIISHVMVEN--LVADHSLDLATNEFIDAATALPSLEPQRNPNM 258
Query: 191 QFPQLRVFLT---VGGDDDTEDPQKYNLLL-----ESPQARTAFTNSALLLAEQYGFDGI 346
+P+L + VG + N L E+P + F + A L F+ +
Sbjct: 259 DWPELALDSNPQIVGSEGKLRRVFSSNATLGFKLPENPSGASRFASEARQLKRSRSFETL 318
Query: 347 DLSW-QLPKRKPKKIRSSIG 403
+LSW + + KIR+S G
Sbjct: 319 NLSWNDIKEEDGDKIRNSYG 338
>At1g23270.1 68414.m02911 hypothetical protein
Length = 180
Score = 29.1 bits (62), Expect = 2.7
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 1/124 (0%)
Frame = -1
Query: 399 ILERIFFGFLFGNCQDRSIPSKPYCSARRRAEL-VKAVRACGDSNKRLYFCGSSVSSSPP 223
+LE++ G D ++P+ P RR L V + S K+L +S++S P
Sbjct: 25 VLEQVAKINCSGFTDDTALPTNPETRLRRLKSLPVSRTDSVSSSPKKLLSHSNSMASHPE 84
Query: 222 TVKNTRN*GNCLFKFVIAR*LACARSMSKFSLSETILYVSAWMPADLYSRWVQNERAGSK 43
K R + + F I +C S + ET ++ + SR E +GSK
Sbjct: 85 --KKYRGNVSSVSSFSIQVGKSCPLDSS---VEETQIFSKTKRNQSVKSRGGLGESSGSK 139
Query: 42 SVGS 31
+GS
Sbjct: 140 RIGS 143
>At5g42390.1 68418.m05161 metalloendopeptidase identical to
chloroplast processing enzyme metalloendopeptidase
[Arabidopsis thaliana] gi|2827039|gb|AAC39482
Length = 1265
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -3
Query: 634 VKCLDVDNVDQVYDAWDVKVNGAIYVWQNADN*LHIGFYIECLF 503
+K DVD + + ++ W N +Y+ + DN I IE +F
Sbjct: 358 IKKWDVDKIRKFHERWYFPANATLYIVGDIDNIPRIVHNIEAVF 401
>At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to SP|P14714
Phytochrome C {Arabidopsis thaliana}
Length = 1111
Score = 28.3 bits (60), Expect = 4.8
Identities = 24/89 (26%), Positives = 38/89 (42%)
Frame = -1
Query: 300 VKAVRACGDSNKRLYFCGSSVSSSPPTVKNTRN*GNCLFKFVIAR*LACARSMSKFSLSE 121
V ++R GD+ + ++ SS R G C+ VIAR A + M + L
Sbjct: 987 VSSMRLYGDNLRLQQILSETLLSSIRFTPALR--GLCVSFKVIARIEAIGKRMKRVELEF 1044
Query: 120 TILYVSAWMPADLYSRWVQNERAGSKSVG 34
I++ + +P DL Q R G+ G
Sbjct: 1045 RIIHPAPGLPEDLVREMFQPLRKGTSREG 1073
>At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 525
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 35 PTDLEPALSFCTHLLYKSAG 94
PTD P+LSFC +Y S G
Sbjct: 321 PTDPNPSLSFCPSNIYSSTG 340
>At3g26920.1 68416.m03368 F-box family protein contains F-box domain
Pfam:PF00646
Length = 565
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 423 LMLCQKDPILERIFFGFLFGNCQ 355
L+L K P LE + GF FG C+
Sbjct: 336 LLLSNKAPFLESLHLGFRFGECR 358
>At2g39720.1 68415.m04874 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 401
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 15 NLKHVCCLRTWSLLFRSAPICCTNLPASKLT 107
++ H C+ W + S P+C LPA LT
Sbjct: 221 HIYHPDCILPWLAIRNSCPVCRHELPAEDLT 251
>At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHX1a
[Arabidopsis thaliana] GI:3790591; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 423
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 24 HVCCLRTWSLLFRSAPICCTNLPASKLTH 110
HV C+ TW L + P+C +NL + +H
Sbjct: 150 HVECIDTWLLSHSTCPLCRSNLLSGFSSH 178
>At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1065
Score = 28.3 bits (60), Expect = 4.8
Identities = 23/86 (26%), Positives = 38/86 (44%)
Frame = +2
Query: 74 LLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQ 253
LL+ +A A Y + + L ID A +++ Q P LR + VG +
Sbjct: 547 LLFSTASCSARLYTGTPI-QLLVIDEAAQLKECESSIPMQLPGLRHLILVGDERQLPAMV 605
Query: 254 KYNLLLESPQARTAFTNSALLLAEQY 331
+ + LE+ R+ F ALL ++Y
Sbjct: 606 ESQIALEAGFGRSLFERLALLGHKKY 631
>At4g15075.1 68417.m02316 hypothetical protein
Length = 168
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +3
Query: 18 LKHVCCLRTWSLLFRSAP 71
L++ CCL+T ++LF+S P
Sbjct: 126 LRNACCLKTATILFKSTP 143
>At1g13540.1 68414.m01587 expressed protein
Length = 381
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 200 QLRVFLTVGGDDDTEDPQKYNLLLESPQARTAF 298
+L V +GGDD T DP + +L+ P + +
Sbjct: 65 KLAVTFNIGGDDSTRDPVVFIPVLDKPLSSNCY 97
>At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 396
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 24 HVCCLRTWSLLFRSAPICCTNLPAS 98
HV C+ W L S P+C LP+S
Sbjct: 282 HVRCIVPWLELHSSCPVCRFELPSS 306
>At5g52520.1 68418.m06516 tRNA synthetase class II (G, H, P and S)
family protein similar to SP|P07814 Bifunctional
aminoacyl-tRNA synthetase [Includes: Glutamyl-tRNA
synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase);
Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA
ligase)] {Homo sapiens}; contains Pfam profiles PF00587:
tRNA synthetase class II core domain (G, H, P, S and T),
PF03129: Anticodon binding domain
Length = 543
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Frame = +2
Query: 452 DKESEHREGFT---ALV-----REMKQALNVKPNMQLVISVLPNVNCSIYFDVPSIIN 601
+KE+ H EGF+ ALV +E+++ L V+P + +++ + Y D+P +IN
Sbjct: 137 EKEASHVEGFSPELALVTVGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLMIN 194
>At3g27220.1 68416.m03403 kelch repeat-containing protein contains
Pfam PF01344: Kelch motif (4 repeats); contains Prosite
PS00334: Myb DNA-binding domain repeat signature 2;
similar to Male enhanced Antigen-1 (peas) (GI:20513270)
[Mus musculus]
Length = 426
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +2
Query: 299 TNSALLLAEQYGFDGIDLSWQLPKRKPKKIRSSIGSFWH 415
T +L+ E + F L+W + R P ++++++ FW+
Sbjct: 355 TKRLVLVGEIFRFQLDTLTWSVIGRLPYRVKTAMAGFWN 393
>At2g46160.1 68415.m05740 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 zinc finger protein
ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 214
Score = 27.5 bits (58), Expect = 8.3
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 24 HVCCLRTWSLLFRSAPIC 77
H+CCL W L S P+C
Sbjct: 162 HLCCLDAWLKLNGSCPVC 179
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,590,821
Number of Sequences: 28952
Number of extensions: 273443
Number of successful extensions: 966
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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