Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_H18
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                 168   4e-42
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                  140   1e-33
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)              93   1e-19
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)              88   5e-18
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               86   2e-17
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)              82   3e-16
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)                      76   2e-14
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   3e-12
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)                57   1e-08
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)            56   3e-08
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)                  32   0.47 
SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)              30   1.9  
SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score =  168 bits (408), Expect = 4e-42
 Identities = 85/163 (52%), Positives = 125/163 (76%), Gaps = 2/163 (1%)
 Frame = +1

Query: 175 SNINAAKAVSDAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMSVIHPAAKMLVELS 354
           S+I AA+AV+  ++TSLGP+GMDKM+ + +GEVT+TNDGATIL  M V H  AK++VELS
Sbjct: 34  SHILAARAVASILKTSLGPKGMDKMMVSPDGEVTVTNDGATILGMMEVDHQIAKLMVELS 93

Query: 355 RAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQAALQVVENMST-- 528
           ++QD E GDGTT VVV+AGALL+ AE+LL  GIHP  I+DG++ A + AL+ +++++   
Sbjct: 94  KSQDNEIGDGTTGVVVLAGALLEHAEQLLDWGIHPIRIADGYELAAKIALEHMDSIADNF 153

Query: 529 PVDLNDEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVME 657
           PVD +++++L++ A T+L SK+VS+    LA IAV A+ +V +
Sbjct: 154 PVDKDNKESLIQTAMTTLGSKIVSRCHRPLAEIAVDAVLSVAD 196


>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score =  140 bits (338), Expect = 1e-33
 Identities = 73/171 (42%), Positives = 112/171 (65%), Gaps = 5/171 (2%)
 Frame = +1

Query: 145 DKSKPTDIRLSNINAAKAVSDAIRTSLGPRGMDKMIQA--SNGEVTITNDGATILKQMSV 318
           ++ +    RLS+   A A+ D ++++LGP+GMDK++Q+   NG + +TNDGATILK + +
Sbjct: 14  EEERAETARLSSFVGAIAIGDLVKSTLGPKGMDKILQSFGQNGNIQVTNDGATILKSIGI 73

Query: 319 IHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQA 498
            +PAAK+LVELS+ QD E GDGTTSV V+   LL  AEKL+   IHP  I  G++K+++A
Sbjct: 74  DNPAAKILVELSKVQDDEVGDGTTSVTVLTSELLKEAEKLVSCKIHPQTIVAGWRKSVKA 133

Query: 499 ALQVVENMSTPVDLNDE---DALLKAAATSLNSKVVSQHSTILAPIAVQAI 642
           A + +E  +     + E   + L+  A T+L+SK++ QH    A +AV A+
Sbjct: 134 AEKALEAAAVDHSSDPEKFREDLMNIARTTLSSKILVQHRDHFAKLAVDAV 184


>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
          Length = 186

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 42/54 (77%), Positives = 49/54 (90%)
 Frame = +1

Query: 139 YKDKSKPTDIRLSNINAAKAVSDAIRTSLGPRGMDKMIQASNGEVTITNDGATI 300
           +KDK KP +IR++NI AAKAV+DAIRTSLGP+GMDKMIQ  NG+VTITNDGATI
Sbjct: 16  FKDKEKPQEIRMTNITAAKAVADAIRTSLGPKGMDKMIQGGNGDVTITNDGATI 69


>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
          Length = 724

 Score = 88.2 bits (209), Expect = 5e-18
 Identities = 38/76 (50%), Positives = 58/76 (76%)
 Frame = +1

Query: 145 DKSKPTDIRLSNINAAKAVSDAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMSVIH 324
           D S+     +SNI+A + ++DA+RT+LGPRGMDK+I    G+ TI+NDGATI+  + ++H
Sbjct: 649 DASQGIPQLISNIDACQFIADAVRTTLGPRGMDKLIVDGRGKATISNDGATIINLLDIVH 708

Query: 325 PAAKMLVELSRAQDIE 372
           PAAK LV+++++QD E
Sbjct: 709 PAAKTLVDIAKSQDAE 724


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 42/126 (33%), Positives = 75/126 (59%)
 Frame = +1

Query: 274 TITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGI 453
           T+   G   ++   + HP A ++  ++ AQD   GDGTTS V+I G LL  A+  + +G+
Sbjct: 157 TMNPFGQNGVQNSQIQHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGL 216

Query: 454 HPTVISDGFQKALQAALQVVENMSTPVDLNDEDALLKAAATSLNSKVVSQHSTILAPIAV 633
           HP ++++GF+ A + AL+V+E +    ++ D D L+  A TSL +KV ++ + +L  + V
Sbjct: 217 HPRLVTEGFEVAKKKALEVLEEVKVSREM-DRDTLINVAKTSLRTKVRTELADLLTEVVV 275

Query: 634 QAIRAV 651
            A+  +
Sbjct: 276 DAVLTI 281


>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 35/80 (43%), Positives = 56/80 (70%)
 Frame = +1

Query: 277 ITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIH 456
           +TNDG  IL+++ V HPAAK ++E+SR QD E GDGTTSV+++AG  +  AE  L++ +H
Sbjct: 1   MTNDGNAILREIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMH 60

Query: 457 PTVISDGFQKALQAALQVVE 516
           PT I   ++ A+   + +++
Sbjct: 61  PTQIIAAYRLAMDDMIDILK 80


>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
          Length = 144

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 43/101 (42%), Positives = 62/101 (61%), Gaps = 3/101 (2%)
 Frame = +1

Query: 349 LSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQAALQVVENMST 528
           LS+ QD E GDGTTSV V+A  LL  AEKL+   IHP  I  G++K+++AA + +E  + 
Sbjct: 2   LSKVQDDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALEAAAV 61

Query: 529 PVDLNDE---DALLKAAATSLNSKVVSQHSTILAPIAVQAI 642
               + E   D L+  A T+L+SK++ QH    A +AV A+
Sbjct: 62  DHSSDPEKFRDDLMNIARTTLSSKILVQHRDHFAKLAVDAV 102


>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 29/70 (41%), Positives = 48/70 (68%)
 Frame = +1

Query: 307 QMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQK 486
           ++ V HPAAK ++E+SR QD E GDGTTSV+++AG  +  AE  L++ +HPT I   ++ 
Sbjct: 208 KIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRL 267

Query: 487 ALQAALQVVE 516
           A+   + +++
Sbjct: 268 AMDDMIDILK 277


>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
          Length = 278

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 30/107 (28%), Positives = 59/107 (55%), Gaps = 4/107 (3%)
 Frame = +1

Query: 163 DIRLSNINAAKAVSDAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMSV----IHPA 330
           + R + +     ++DA+  +LGP+G + +I+ S G   IT DG T+ K + +     +  
Sbjct: 67  EARAAMLQGVDTLADAVAVTLGPKGKNVIIEQSFGGPKITKDGVTVAKAIELKDKYQNIG 126

Query: 331 AKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVIS 471
           A+++ +++   + EAGDGTT+  V+A ++       + KG +P  +S
Sbjct: 127 ARLVQDVANNTNEEAGDGTTTATVLARSIATEGFLHVSKGANPQEVS 173


>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
          Length = 563

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 22/65 (33%), Positives = 43/65 (66%)
 Frame = +1

Query: 211 IRTSLGPRGMDKMIQASNGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTT 390
           ++ S GP G+D M+++S+G + ITN G+ IL+ +++ +P  +M+VE +R+     G G +
Sbjct: 16  LKKSFGPNGLDVMLRSSSGNILITNSGSMILESLTMGNPTERMIVEAARSLSGRTGSGAS 75

Query: 391 SVVVI 405
             ++I
Sbjct: 76  YFIII 80


>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
          Length = 559

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 22/65 (33%), Positives = 33/65 (50%)
 Frame = +1

Query: 328 AAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQAALQ 507
           A++ML E+SR      GD +     ++G  L   EKLL+  +HP  I  G  K L   +Q
Sbjct: 238 ASQMLYEVSRL----LGDKSIVASFVSGVDLSRQEKLLKDSLHPPRIVIGTPKRLWEIVQ 293

Query: 508 VVENM 522
             E++
Sbjct: 294 EHEHL 298


>SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
          Length = 346

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 309 LFKNSSTIICNSHFTIRCLNHFIHSSRSQTCPNC 208
           + +N+ T IC   F   CL  ++     Q+CP+C
Sbjct: 24  VLENAITTICGHSFCESCLETWLSRPEVQSCPSC 57


>SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1743

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 411  TCNDHNRSSAITSLYILST*QFY*HFSSWM 322
            +CN ++RS+ +  L I++   +Y H SSW+
Sbjct: 1021 SCNGYSRSNDLRLLLIVADAFYYKHLSSWL 1050


>SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 649

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
 Frame = -1

Query: 306 FKNSSTIICNSHFTIRCLNHFIHSSRSQ---TCPNC 208
           +KN   + C   F +RC+   +H S  +    CP C
Sbjct: 27  YKNPMLLRCYHSFCLRCVQELLHQSGEKGVVKCPQC 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.130    0.340 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,640,662
Number of Sequences: 59808
Number of extensions: 305934
Number of successful extensions: 735
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)