Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_M11
         (550 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10929| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_22485| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  

>SB_10929| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 636

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 332 YCSESLKCGAFFFDVNPCDDXFMIDALDAAKSFYNQLNNVST 457
           +CS+S+K        + CD  + +  +D     Y  LNN  T
Sbjct: 97  FCSKSVKSNQMGVQCDSCDKWYHVRCMDMPTEVYQGLNNSCT 138


>SB_22485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 519

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +2

Query: 107 TIKMILIASVITQIFCAPQEIIRNSSTLRTPANLSYEELEYILSVRNGQVQVKPKTLSPC 286
           T+KM L+   I  +F  P +I+     L    N  Y  L   L +     +    T S  
Sbjct: 285 TVKMFLLIVTIFLLFMLPNQILW---LLFDFGNSEY--LLAHLDLIAFTCRAFTYTNSVL 339

Query: 287 ARAILGCCNGNVMNSY-CSESLKCG 358
             AI G CNG+  N++ C+   KCG
Sbjct: 340 NAAIYGACNGSFRNAFACTLKCKCG 364


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,388,792
Number of Sequences: 59808
Number of extensions: 262071
Number of successful extensions: 639
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)