Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_P08
         (810 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    36   4e-04
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    36   4e-04

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 35.9 bits (79), Expect = 4e-04
 Identities = 20/72 (27%), Positives = 24/72 (33%)
 Frame = -2

Query: 488 WXXGXXVXXIAGXIXXXFEXIRXGKXKQFXXXXXXXLXXKTXXWWGXXXXXXGXXAFFXG 309
           W     V  +AG +   F+ +R     Q        L   T   W       G  AFF G
Sbjct: 216 WGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKG 275

Query: 308 XFXXXLXXNGGA 273
            F   L   GGA
Sbjct: 276 AFSNILRGTGGA 287



 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -3

Query: 574 IXYRAX*XGF*XTXPGNXPXPKXXP 500
           I YRA   GF  T  G  P PK  P
Sbjct: 187 IIYRAAYFGFYDTARGMLPDPKKTP 211


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 35.9 bits (79), Expect = 4e-04
 Identities = 20/72 (27%), Positives = 24/72 (33%)
 Frame = -2

Query: 488 WXXGXXVXXIAGXIXXXFEXIRXGKXKQFXXXXXXXLXXKTXXWWGXXXXXXGXXAFFXG 309
           W     V  +AG +   F+ +R     Q        L   T   W       G  AFF G
Sbjct: 216 WGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKG 275

Query: 308 XFXXXLXXNGGA 273
            F   L   GGA
Sbjct: 276 AFSNILRGTGGA 287



 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -3

Query: 574 IXYRAX*XGF*XTXPGNXPXPKXXP 500
           I YRA   GF  T  G  P PK  P
Sbjct: 187 IIYRAAYFGFYDTARGMLPDPKKTP 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,142
Number of Sequences: 438
Number of extensions: 653
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)