Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_M23
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   4.8  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   8.4  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    22   8.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   8.4  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 140 TNYYMYKRNVSRNCILVIGV 81
           TNYY++   +S   +LV+G+
Sbjct: 75  TNYYLFSLAISDLILLVLGL 94


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 140 TNYYMYKRNVSRNCILVIGV 81
           TNYY++   VS    L++G+
Sbjct: 68  TNYYLFNLAVSDLLFLILGL 87


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +3

Query: 174 VMRP*IMLNSLRKKIVYDIFFVYGVFI 254
           VMRP +++ S+   ++  I  +YG+ +
Sbjct: 45  VMRPELIMKSIIPVVMAGIIAIYGLVV 71


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = +2

Query: 599 LRGAWCADLPLVVMTTMADLSFSETAGRSXGMPGRLTPF 715
           L  +W A +PL +     +L++S+  G        L P+
Sbjct: 436 LASSWPALVPLALGFLAGELTYSQEIGDRQERESELVPY 474


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,719
Number of Sequences: 438
Number of extensions: 4173
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)