Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_M05
         (818 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.9  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    23   4.5  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    23   4.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   4.5  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    23   4.5  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 287 IEPIENLTEAFHVG-QIVSCTILNVDIENK 201
           I P++N+TE  HV   +    ++NV+ +N+
Sbjct: 42  IRPVQNMTEKVHVNFGLAFVQLINVNEKNQ 71


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 611 HPPQGDQDV*XGDCLHVTVD 670
           HP  G  +   G CLH TVD
Sbjct: 128 HPVTGCGERTEGRCLHYTVD 147


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 611 HPPQGDQDV*XGDCLHVTVD 670
           HP  G  +   G CLH TVD
Sbjct: 133 HPVTGCGERTEGRCLHYTVD 152


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 432 EEGRLQGQHEGRLGRVHGT 488
           +EG L+ Q    LGRVH T
Sbjct: 382 KEGGLEAQWSRVLGRVHAT 400


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 611 HPPQGDQDV*XGDCLHVTVD 670
           HP  G  +   G CLH TVD
Sbjct: 133 HPVTGCGERTEGRCLHYTVD 152


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,822
Number of Sequences: 438
Number of extensions: 4006
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)