Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_M03
         (780 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             217   1e-58
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    25   0.79 
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    24   1.8  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   7.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   7.4  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  217 bits (529), Expect = 1e-58
 Identities = 105/127 (82%), Positives = 109/127 (85%)
 Frame = -1

Query: 729 ASAXPXRXLRLPDGQVITIGNEDSVAQRLSSNPRSLGMEACGIHETTYNSIMKCDVDIRK 550
           +S+   +   LPDGQVITIGNE          P  LGMEACGIHETTYNSIMKCDVDIRK
Sbjct: 7   SSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRK 66

Query: 549 DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 370
           DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE+KYSVWIGGSILASLST
Sbjct: 67  DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLST 126

Query: 369 FQQMWIS 349
           FQQMWIS
Sbjct: 127 FQQMWIS 133


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = -1

Query: 585 NSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV 406
           N  +K D DI++  Y + V      MYP  +  M+K I+    +  KI I  P E K  +
Sbjct: 342 NKELKYD-DIKEMEYLDKVFKETLRMYPPASILMRKAISDYTFNDTKITI--PKEMK--I 396

Query: 405 WI 400
           WI
Sbjct: 397 WI 398


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 740 MXPXHQQXPXEXYDFPTVRSSPSETKIPLPRGSL 639
           M   H   P E  D P    SP +TK+ +  G L
Sbjct: 63  MIRTHSTXPXEEDDGPYKWISPGDTKVMVEHGEL 96


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 532 RIVRWYHHVPWNRRPYAK 479
           RI+ +YH    +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 532 RIVRWYHHVPWNRRPYAK 479
           RI+ +YH    +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,938
Number of Sequences: 438
Number of extensions: 4563
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)