Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_M01
         (779 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X05562-1|CAA29076.1| 1043|Homo sapiens protein ( Human mRNA for ...    31   6.1  
AL161773-3|CAH71366.2| 1712|Homo sapiens collagen type IV alpha ...    31   6.1  
AL159153-1|CAH72050.2| 1712|Homo sapiens collagen type IV alpha ...    31   6.1  
AL139385-2|CAI17005.2| 1712|Homo sapiens collagen type IV alpha ...    31   6.1  

>X05562-1|CAA29076.1| 1043|Homo sapiens protein ( Human mRNA for
           alpha-2 chain of collagen IV N-terminus. ).
          Length = 1043

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 246 GIPRFMGDNCKPQSPARRSFSGLPGPLGQG 335
           G+P   GD+  P       F GLPGP G G
Sbjct: 566 GVPGMKGDDGSPGRDGLDGFPGLPGPPGDG 595


>AL161773-3|CAH71366.2| 1712|Homo sapiens collagen type IV alpha 2
           protein.
          Length = 1712

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 246 GIPRFMGDNCKPQSPARRSFSGLPGPLGQG 335
           G+P   GD+  P       F GLPGP G G
Sbjct: 566 GVPGMKGDDGSPGRDGLDGFPGLPGPPGDG 595


>AL159153-1|CAH72050.2| 1712|Homo sapiens collagen type IV alpha 2
           protein.
          Length = 1712

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 246 GIPRFMGDNCKPQSPARRSFSGLPGPLGQG 335
           G+P   GD+  P       F GLPGP G G
Sbjct: 566 GVPGMKGDDGSPGRDGLDGFPGLPGPPGDG 595


>AL139385-2|CAI17005.2| 1712|Homo sapiens collagen type IV alpha 2
           protein.
          Length = 1712

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 246 GIPRFMGDNCKPQSPARRSFSGLPGPLGQG 335
           G+P   GD+  P       F GLPGP G G
Sbjct: 566 GVPGMKGDDGSPGRDGLDGFPGLPGPPGDG 595


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,782,959
Number of Sequences: 237096
Number of extensions: 2807524
Number of successful extensions: 6544
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6531
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9478778060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)