Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_L24
         (853 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.2  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              22   8.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   8.2  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 498 NLCLGDTDSLPPPCMNTLWPGSCG 569
           N+ LGD+D+ P P      P S G
Sbjct: 329 NIVLGDSDTPPKPAPPPPPPSSSG 352


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 368 CTLPNFNSISKSNDF 412
           C L NFN + K+N F
Sbjct: 65  CILKNFNILDKNNVF 79


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +3

Query: 375 CPTSILFRNQMISSTKRPLERSSQTQSP 458
           CP++++     I+ +++PL  S ++ SP
Sbjct: 857 CPSNMMELQVDIADSQQPLNLSKKSPSP 884


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,885
Number of Sequences: 438
Number of extensions: 3339
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)