Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_L09
         (808 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    26   0.36 
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   3.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.8  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 767 DXVHXEGRWLPAGP 726
           D +H E R+LPAGP
Sbjct: 4   DSIHWEARYLPAGP 17


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 800 LVEXRHQRIRADXVHXEGRWL 738
           L+  RH+R+  D +  + +WL
Sbjct: 54  LLPLRHRRVTCDVLSWQSKWL 74


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 205 VLVPAKSTVVVSYVPIKHEKREKD 134
           +L+   ST VVS    KH +R +D
Sbjct: 13  LLLSIASTYVVSVAGYKHSRRHRD 36


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -1

Query: 694 RPPSAAPVPVTEDADALASRINKTLGSWPILQLTDTN 584
           R P+A+P P  + A           GS  +LQ   +N
Sbjct: 739 RSPNASPSPAEQCASTTTITARSPQGSQGLLQCATSN 775


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,260
Number of Sequences: 438
Number of extensions: 4317
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)