Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_K03
         (817 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.9  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   7.8  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 623 VVHVALSLG*TPPRPCPSPGVP 688
           +V++ L    TPP+P P P  P
Sbjct: 327 LVNIVLGDSDTPPKPAPPPPPP 348


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 493 ITPFPSLAFREIHNTFAFRIYIVTSI 416
           + PFP+ AFR+  ++ A+R     S+
Sbjct: 89  LLPFPAAAFRQDVHSAAYRCVASNSV 114



 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 594 PGYCWYSETRSFMLLSASG 650
           P Y WY++T S  +L  SG
Sbjct: 267 PEYRWYAQTGSEPMLVLSG 285


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 493 ITPFPSLAFREIHNTFAFRIYIVTSI 416
           + PFP+ AFR+  ++ A+R     S+
Sbjct: 89  LLPFPAAAFRQDVHSAAYRCVASNSV 114



 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 594 PGYCWYSETRSFMLLSASG 650
           P Y WY++T S  +L  SG
Sbjct: 267 PEYRWYAQTGSEPMLVLSG 285


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 656 PPRPCPSPGVPMQESXAPEHSGXLFRDALEQLLE 757
           P R C + G    +S    HS  ++ DAL   L+
Sbjct: 585 PQRACSTTGGVPSKSPTLTHSPTMYGDALNANLQ 618


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 397 HDKITLGSTRYVAVTGC 347
           HD    GS+ ++AV GC
Sbjct: 350 HDTTASGSSFFLAVMGC 366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,606
Number of Sequences: 438
Number of extensions: 3936
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)