Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_I05
         (808 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    26   0.47 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   5.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   7.7  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 516 EIPVQTEIDSVKNDSSAITLECDMKMLSPMTLSPKSVED 400
           EIP++ E    +N+S      C++   SP T+ P+++ D
Sbjct: 338 EIPLEEEEWENENESDYQDAFCNIVSCSPQTVHPETIID 376


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 6/34 (17%), Positives = 18/34 (52%)
 Frame = +1

Query: 556 FVTACVEYVAFIVVLLFDFEKVCCVCVGMNIKSV 657
           +V+    YV+ + ++ F  E+   +C  + + ++
Sbjct: 119 YVSEMSSYVSVLTIVAFSMERYLAICHPLRVYTI 152


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 636 RDEH*KCCASILSTSCLMSTTAPD 707
           R+   +  +S+ S  CL+ T +PD
Sbjct: 181 RENELRALSSLFSKGCLVGTWSPD 204


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 636 RDEH*KCCASILSTSCLMSTTAPD 707
           R+   +  +S+ S  CL+ T +PD
Sbjct: 181 RENELRALSSLFSKGCLVGTWSPD 204


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 636 RDEH*KCCASILSTSCLMSTTAPD 707
           R+   +  +S+ S  CL+ T +PD
Sbjct: 181 RENELRALSSLFSKGCLVGTWSPD 204


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 170 LNITFQ*LKTYN*SVFGGNFFQNYAPRL 253
           LN+ F+   T+N S +    F N+ PRL
Sbjct: 334 LNVHFRSPSTHNMSPWVRQVFLNWMPRL 361


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,620
Number of Sequences: 438
Number of extensions: 3527
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)