Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_H18
         (823 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    25   1.1  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              24   2.0  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   3.4  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    22   7.9  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 791 DVGPKXRRYYPDVPW*ILAL 732
           ++G   R YYP V W IL +
Sbjct: 187 EIGIDLREYYPSVEWDILGV 206


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 759 GCAMVDSCSNIFTGDQ 712
           G  M+DSCSN+ + D+
Sbjct: 106 GVEMIDSCSNVDSSDK 121


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 20/82 (24%), Positives = 31/82 (37%)
 Frame = -2

Query: 582 RRDPSKPQRRLLRYHDTSDPMGTKPTYRD*SQELRAVERKVLRRRKPLHAGYLIPASSLQ 403
           RR     +R    Y +  +    + T R+ S++ R   R    R  P H    IPA    
Sbjct: 285 RRYSRSREREQKSYKNEREYREYRETSRERSRDRRGRGRSREHRIIPSHYIEQIPAPVYY 344

Query: 402 RKFPEKPSIYKLV*DAQSTTPG 337
             FP +P + +     +   PG
Sbjct: 345 GNFPPRPIMVRPWVPMRGQVPG 366


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 545 VTMTQVIQWVQNPRTVTEAKN 483
           +T TQV  W QN RT  + +N
Sbjct: 47  LTETQVKIWFQNRRTKWKKQN 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,326
Number of Sequences: 438
Number of extensions: 4885
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)