Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_H02
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   1.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   4.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   5.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   7.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.5  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -2

Query: 761 NRFXIHWMVTRHIPPXPSGDIATRRASVA--IATTKKHRRSISPLH 630
           N   I+W       P P G +AT +  VA  +A T K+  ++   H
Sbjct: 127 NAARINWEYLDKYKPTPLGAVATEKMFVARHLAETPKNTSAVRYTH 172


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 396 DVELSDNVKKICNEINDFCSSKAIDIAQYMERRAS 292
           D++  D+VK     ++   SS  IDI  +M  RAS
Sbjct: 322 DIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRAS 356


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 313 LCYVNGF*RAKIINFVAYFLYI 378
           L YV+GF   ++    A FLYI
Sbjct: 232 LLYVSGFITTEVAGTYAIFLYI 253


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = -1

Query: 333 KAIDIAQYMER--RASDIEDLDCSDCVRNENGECDIVCANNVRDVIVI--PSAEAILDT 169
           K  +IA Y+ +      + DL  +  V   N     +  NNV+DV+V   PS    L+T
Sbjct: 76  KFSNIAPYLNQIYGGQFVRDLIWTPTVYVSNEPSSAITGNNVKDVLVSIDPSGMVRLNT 134


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 21/76 (27%), Positives = 30/76 (39%)
 Frame = -1

Query: 366 ICNEINDFCSSKAIDIAQYMERRASDIEDLDCSDCVRNENGECDIVCANNVRDVIVIPSA 187
           +  +IN        DI Q +ER    I +   +  V N  GE   +   N  DV+     
Sbjct: 292 VLKDINRQVDELNFDI-QDLERWRDRIYEAIHTGSVINTRGERIQLTEKNGIDVLGNIME 350

Query: 186 EAILDTGQSCQSDRHN 139
            +IL   Q+   D HN
Sbjct: 351 ASILSPNQNVYGDLHN 366


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 732 SPHSAXTLRRHRHSKSVG 679
           +PH A T R H ++  VG
Sbjct: 608 APHKAFTYRMHGYASVVG 625


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,473
Number of Sequences: 438
Number of extensions: 3828
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)