Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_G24
         (902 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.9  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   5.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   5.0  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   6.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.7  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +1

Query: 217 KYIHSSSSTCSSPRWM*ASPIVRRNERSSAFRIQSLPAYRRKLPVQRARGR 369
           K + SSS+T +SP     S IV RN  +S   + + P +++KL    A+ R
Sbjct: 320 KPVLSSSTTTTSPMTSTKSTIV-RNHLNSTCSVTNSP-HQKKLRFHLAKER 368


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 429 WPLEQKCSGLETTYR 385
           W   Q CSG+ + YR
Sbjct: 113 WAKNQNCSGITSVYR 127


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 357 GKGTPNAALTGTWSPVQNTSAPTAIASATCMSG 455
           GK +PN+A+    SP+  + A  + ++    SG
Sbjct: 580 GKTSPNSAVRKCMSPINGSGASGSGSAENLSSG 612


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -1

Query: 233 ELWMYFLASESLDSTTFLN*MTLINVIEVSRTT*MCVIKETYTVKCD 93
           E+W+  +   S+ S      M  +  I  +  T +CV   TYT  C+
Sbjct: 114 EIWVPDIVMHSVTSVGIDLEMPSVECIVFNSGTILCVPFTTYTPVCE 160


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = +3

Query: 303 RLPHPISPSISPQATGPTGKGTPNAALTGTWSPVQNTSAPTAIASATCMSGPLPFP 470
           +LPH   P +SPQ+   +   +  + ++    P+    A + +A+A   + P   P
Sbjct: 434 KLPHDDQPPLSPQSDSSSSSRSAESPMSVQVDPM----AASVVAAALTGTYPTLLP 485


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,034
Number of Sequences: 438
Number of extensions: 5417
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)