Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_G22
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   4.8  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   4.8  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    22   6.3  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   6.3  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    22   6.3  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    22   6.3  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    22   6.3  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   6.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   8.4  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 2/123 (1%)
 Frame = -3

Query: 582 EKSTNKENKITITNDKG--RLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSM 409
           E+S +++       D+   +L  E+ + +     + RN   +++E    KN  E   +  
Sbjct: 1   ERSCSRDRNREYRKDRRYEKLHNEKEKLLEERTNRKRNSRSREREQNSYKNEREYRKYRE 60

Query: 408 KSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGIYNPIITK 229
            S        E+    + + I    N+TI   +     +   Y +     +  YN I  +
Sbjct: 61  TSKERSRDRTERERSREPKIISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYYNIINIE 120

Query: 228 MXP 220
             P
Sbjct: 121 QIP 123


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 2/123 (1%)
 Frame = -3

Query: 582 EKSTNKENKITITNDKG--RLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSM 409
           E+S +++       D+   +L  E+ + +     + RN   +++E    KN  E   +  
Sbjct: 1   ERSCSRDRNREYRKDRRYEKLHNEKEKLLEERTNRKRNSRSREREQNSYKNEREYRKYRE 60

Query: 408 KSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGIYNPIITK 229
            S        E+    + + I    N+TI   +     +   Y +     +  YN I  +
Sbjct: 61  TSKERSRDRAERERSREPKIISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYYNIINIE 120

Query: 228 MXP 220
             P
Sbjct: 121 QIP 123


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 550 HYQRQRSSLQGRDRAY 503
           HY R+RS  + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 550 HYQRQRSSLQGRDRAY 503
           HY R+RS  + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 550 HYQRQRSSLQGRDRAY 503
           HY R+RS  + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 550 HYQRQRSSLQGRDRAY 503
           HY R+RS  + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 550 HYQRQRSSLQGRDRAY 503
           HY R+RS  + R+R Y
Sbjct: 219 HYSRERSCSRDRNREY 234


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 550 HYQRQRSSLQGRDRAY 503
           HY R+RS  + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 610 QRYPQRFRYREVHQ-QGEQDHHYQRQRSSLQGRDR 509
           +RY  R R RE +  + E+++   R+RS  + RDR
Sbjct: 270 KRY-SRSREREQNSYKNEREYRKYRERSKERSRDR 303


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,584
Number of Sequences: 438
Number of extensions: 4223
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)