Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_G10
         (843 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   1.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   3.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 509  VGRWGHSPPRLATWRPRPGRATDASKAAETRTGPS 613
            VG W +S   L   R +PG+++ A+  A     P+
Sbjct: 1022 VGAWAYSKYGLRFLRAKPGKSSGAAAMASAAPMPA 1056


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 470 PPAPSGPDSSK 438
           PP+ SGPDS+K
Sbjct: 347 PPSSSGPDSAK 357


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 133 IVSSIAFDNKDISDNYLSKLSSNKLAV 213
           +VS   FD K +SD  + KLS +  +V
Sbjct: 209 VVSDPIFDKKAMSDLVICKLSHSNASV 235


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 133 IVSSIAFDNKDISDNYLSKLSSNKLAV 213
           +VS   FD K +SD  + KLS +  +V
Sbjct: 209 VVSDPIFDKKAMSDLVICKLSHSNASV 235


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,748
Number of Sequences: 438
Number of extensions: 4332
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)