Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_G05
         (861 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    23   4.8  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    23   4.8  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    23   4.8  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    23   4.8  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    23   4.8  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   4.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.3  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   6.3  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   6.3  

>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 573 HQXGEQDHHYQRQRSSLQGRDRAY 502
           H       HY R+RS  + R+R Y
Sbjct: 222 HGFQHTSSHYSRERSCSRDRNREY 245


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 573 HQXGEQDHHYQRQRSSLQGRDRAY 502
           H       HY R+RS  + R+R Y
Sbjct: 222 HGFQHTSSHYSRERSCSRDRNREY 245


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 573 HQXGEQDHHYQRQRSSLQGRDRAY 502
           H       HY R+RS  + R+R Y
Sbjct: 222 HGFQHTSSHYSRERSCSRDRNREY 245


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 573 HQXGEQDHHYQRQRSSLQGRDRAY 502
           H       HY R+RS  + R+R Y
Sbjct: 222 HGFQHTSSHYSRERSCSRDRNREY 245


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 573 HQXGEQDHHYQRQRSSLQGRDRAY 502
           H       HY R+RS  + R+R Y
Sbjct: 211 HGFQHTSSHYSRERSCSRDRNREY 234


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 573 HQXGEQDHHYQRQRSSLQGRDRAY 502
           H       HY R+RS  + R+R Y
Sbjct: 222 HGFQHTSSHYSRERSCSRDRNREY 245


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 530 RLSKEEIERMVNEAEKYRKRG*QAKGDHPG 441
           R++ E ++++  +  KYR  G   KG+  G
Sbjct: 495 RINIERMKQVYQQLNKYRGNGVSLKGETVG 524


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -2

Query: 647 ACXKXEVTFDIDANGIXNVSAIEKSTNXENKIT 549
           AC   +  FD   N I N+  I KSTN   KIT
Sbjct: 44  ACILIKDLFDNVHNHIQNIFKIIKSTN--EKIT 74


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -2

Query: 647 ACXKXEVTFDIDANGIXNVSAIEKSTNXENKIT 549
           AC   +  FD   N I N+  I KSTN   KIT
Sbjct: 27  ACILIKDLFDNVHNHIQNIFKIIKSTN--EKIT 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,233
Number of Sequences: 438
Number of extensions: 3029
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)