Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_F20
         (809 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             118   8e-29

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  118 bits (283), Expect = 8e-29
 Identities = 55/59 (93%), Positives = 56/59 (94%)
 Frame = -3

Query: 597 SGGTTMYPGIADRMQKEITAXAPSTMKIKIIAPPERKYSVWIGGSILASLFTFQQMWXS 421
           SGGTTMYPGIADRMQKEITA APSTMKIKIIAPPE+KYSVWIGGSILASL TFQQMW S
Sbjct: 75  SGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTFQQMWIS 133



 Score = 46.4 bits (105), Expect = 3e-07
 Identities = 24/45 (53%), Positives = 25/45 (55%)
 Frame = -2

Query: 724 PEXFFXPXFWVWKLAASTEXTNXSIMKCDVDIRKXLYAXTVFFRG 590
           PE  F P F   +     E T  SIMKCDVDIRK LYA TV   G
Sbjct: 33  PEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 77



 Score = 44.4 bits (100), Expect = 1e-06
 Identities = 21/41 (51%), Positives = 21/41 (51%)
 Frame = -1

Query: 794 SLXNFXEFPDGXVIXXGKXGXXXPRGFFPXXFLGMEACGIH 672
           SL    E PDG VI  G      P   F   FLGMEACGIH
Sbjct: 10  SLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIH 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,794
Number of Sequences: 438
Number of extensions: 2858
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)