Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_F08
         (829 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    27   0.16 
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    27   0.16 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.0  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 27.5 bits (58), Expect = 0.16
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
 Frame = +3

Query: 45  VQEKCDKFYRAFATYHTINIIFCPPRHNVSSEVLHFNSLSVHFGAVKEFDTTLGVAHVEE 224
           ++EK D F         ++ I+  P  +   ++ ++  +   FG + + D  +  AH + 
Sbjct: 54  IKEKLDHFLEMGVDMFWLSPIYPSPMVDFGYDISNYTDVHPIFGTISDLDNLVSAAHEKG 113

Query: 225 ----ADDRPTHAQHIHE 263
                D  P H    HE
Sbjct: 114 LKIILDFVPNHTSDQHE 130


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 27.5 bits (58), Expect = 0.16
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
 Frame = +3

Query: 45  VQEKCDKFYRAFATYHTINIIFCPPRHNVSSEVLHFNSLSVHFGAVKEFDTTLGVAHVEE 224
           ++EK D F         ++ I+  P  +   ++ ++  +   FG + + D  +  AH + 
Sbjct: 54  IKEKLDHFLEMGVDMFWLSPIYPSPMVDFGYDISNYTDVHPIFGTISDLDNLVSAAHEKG 113

Query: 225 ----ADDRPTHAQHIHE 263
                D  P H    HE
Sbjct: 114 LKIILDFVPNHTSDQHE 130


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 388 PYTHLNLTTPSNRPAWWSL 332
           P+  L L   + RPA+WSL
Sbjct: 317 PFPFLMLPLGAGRPAFWSL 335


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 368 QIQMRVRTARRGRPCCL 418
           +I+++ +TARRG P  L
Sbjct: 780 EIKLKNQTARRGEPAVL 796


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,518
Number of Sequences: 438
Number of extensions: 3969
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)