Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_F06
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    75   2e-14
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    29   1.1  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    27   4.5  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    26   6.0  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    26   7.9  
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    26   7.9  

>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 74.5 bits (175), Expect = 2e-14
 Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
 Frame = -1

Query: 587 PRPPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQ 408
           P   ++ KN CE V MDFD L A  +SLGT ++IV++    I +++     FY   +C  
Sbjct: 320 PCSGILNKNQCEQVTMDFDSLKALDSSLGTGSVIVLNDHDQIFESLLNFAKFYSTNTCHT 379

Query: 407 CTPCREGVSWMNKIIYRFVDGNASPKEI-DMLWEISKQIEGHTICALGDGAAWPVQGLIR 231
           C  CR+GV  + + +    DG+A   ++ DM  + +        C  GD     +  + R
Sbjct: 380 CPVCRDGVEDVIETLKGLKDGHAHLSQLKDMFSKFNMPSSSKVFCGFGDSMRHQIHSIQR 439

Query: 230 HFRPELERR 204
           +F  ++  R
Sbjct: 440 NFPDQITFR 448



 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 17/26 (65%), Positives = 21/26 (80%)
 Frame = -3

Query: 666 LKELIERHAGGVTGGWDNLLAIIPGG 589
           LK+LIE +AGGV GGW+ L+ I PGG
Sbjct: 294 LKDLIENYAGGVRGGWNKLVGIFPGG 319



 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 727 FNISGHVNTPCTVEEEMSIP 668
           F+ISG VN P  +E  MSIP
Sbjct: 274 FSISGEVNEPNVIEACMSIP 293


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -3

Query: 651 ERHAGGVTGGWDNLLAIIPGGSSTPAHTQERLRDSVDGLRRSSSRADLPGHG 496
           +R  G +T G   +  I   G S+P +TQ R R +     R + R   PG G
Sbjct: 86  KRTGGSMTPGLGAMSPIPGSGRSSPLYTQPRSRATSPSRVRQADRFAAPGIG 137


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 377 MNKIIYRFVDGNASPKEIDMLWEISKQIEG 288
           +NK + ++VD   +P E   L+EIS Q+EG
Sbjct: 217 INKPVTKYVDN--TPVEFGWLYEISYQLEG 244


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -1

Query: 272  LGDGAAWPVQGLIRHFRPELERRMQEFSAAHGPSKAERLY**CNTRRTSTLH 117
            LGD   +  Q L      ++E  + E  ++ GP+  +R+Y     +++ST H
Sbjct: 867  LGDEYLYSEQSLNHEEEEQMEEELSEIFSSGGPNVVDRVY----LKKSSTRH 914


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = -1

Query: 467 DIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIE 291
           D+V+A+ R+ + Y +   GQ      GV W+ +        +  P+ +  ++E++K  E
Sbjct: 709 DVVEAMFRIALIYLNGLLGQKRNISLGVQWLERAC-----KSKGPESVRAMYELAKIYE 762


>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +3

Query: 255 RGSVAQSADRVPFDLFRNFPQHVDFF 332
           + +V Q+ + + F++FR +P H+  F
Sbjct: 142 QSAVNQALESIKFEVFREYPVHIQEF 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,018,686
Number of Sequences: 5004
Number of extensions: 58460
Number of successful extensions: 174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)