Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_F06
         (857 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    25   1.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   1.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   4.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.3  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 266 RPERRSCALRFVSKFPTACRFLSV 337
           +P +++C   ++SKFPT  + + V
Sbjct: 394 QPRKKNCCRSWLSKFPTRSKRIDV 417


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 266 RPERRSCALRFVSKFPTACRFLSV 337
           +P +++C   ++SKFPT  + + V
Sbjct: 394 QPRKKNCCRSWLSKFPTRSKRIDV 417


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 240 THTSLPARARATHAGVLGRARAEQSRAP 157
           TH+ L    R+TH  V G  R   +R P
Sbjct: 377 THSQLCPTPRSTHLKVSGINRVGSTRRP 404


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = -3

Query: 504 GHGGHHCHGQVN*HREGDRSTHH 436
           GHG  H H   + H     + HH
Sbjct: 420 GHGHSHIHATPHHHHSHAATPHH 442


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,344
Number of Sequences: 438
Number of extensions: 4056
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)