Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_D22
         (844 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   4.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 14/46 (30%), Positives = 15/46 (32%)
 Frame = -3

Query: 827 SRXXPGPXPVTKGYXXQ*GPWGXPYPXQIPKPGXTPVXKPXPYPGR 690
           S   PGP P              P P Q P PG  P   P   P +
Sbjct: 17  SSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQ 62


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -2

Query: 615 YPRQGTSARPLPPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCT 469
           YP   +S  P+P +     ++   P  S  + P+T  T +T+ +T   T
Sbjct: 72  YPAFSSSCDPVPGNLEQIGSRPLHPPASSTSLPATITTTTTTTTTTTAT 120


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 231 VRSKDVEYVRIWNPTTIL 284
           +R   V Y R+W P TIL
Sbjct: 77  IRVIRVPYNRVWRPDTIL 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,606
Number of Sequences: 438
Number of extensions: 4590
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)