Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_D16
         (849 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   1.2  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   2.7  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   2.7  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   2.7  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   2.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   4.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.7  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   6.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   8.2  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = -1

Query: 408 HRHQRQDAHPHRGEPLRDRPRGHQAG 331
           H+H     HPHRG     +   H  G
Sbjct: 319 HQHHPSQYHPHRGSSPHHQHGNHTMG 344


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 78  NNKYNVDCKQYYSTNKYL 131
           NN YN +CK+ Y    Y+
Sbjct: 102 NNNYNNNCKKLYYNINYI 119


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 78  NNKYNVDCKQYYSTNKYL 131
           NN YN +CK+ Y    Y+
Sbjct: 102 NNNYNNNCKKLYYNINYI 119


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 78  NNKYNVDCKQYYSTNKYL 131
           NN YN +CK+ Y    Y+
Sbjct: 102 NNNYNNNCKKLYYNINYI 119


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 78  NNKYNVDCKQYYSTNKYL 131
           NN YN +CK+ Y    Y+
Sbjct: 102 NNNYNNNCKKLYYNINYI 119


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 75  INNKYNVDCKQYYSTNKY 128
           I+N Y  DC   YST  +
Sbjct: 183 ISNNYTTDCTIEYSTGNF 200


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 72  LINNKYNVDCKQYYSTNKY 128
           L+ N Y  DC Q YST  +
Sbjct: 214 LVKN-YTADCTQVYSTGNF 231


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 259 VLLTLVS*EHNNKTTNVSSNCLFNV 185
           +L+T V+  +NN      + CL N+
Sbjct: 467 ILMTTVNEGNNNMAATYMNECLLNI 491


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 78  NNKYNVDCKQYY 113
           NN YN +CK+ Y
Sbjct: 344 NNNYNNNCKKLY 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,941
Number of Sequences: 438
Number of extensions: 3951
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)