Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_D12
         (852 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   4.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   6.2  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 465 HPRKERDSEDLSTSSIFGSAKASQE 391
           HP  + DSE+  T   F S  AS+E
Sbjct: 393 HPSTQEDSEEHLTPKRFHSRAASKE 417


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 465 HPRKERDSEDLSTSSIFGSAKASQE 391
           HP  + DSE+  T   F S  AS+E
Sbjct: 393 HPSTQEDSEEHLTPKRFHSRAASKE 417


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 26  NILFLYYWLHHFKLRISFKNLSIS 97
           N  F+ +W HHF+ R  + N S++
Sbjct: 423 NPWFVEFWEHHFQCR--YPNASVT 444


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +2

Query: 323 TCKNFFPRTAVN 358
           T KNF PR AVN
Sbjct: 148 TVKNFHPRCAVN 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,815
Number of Sequences: 438
Number of extensions: 3729
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)