Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_D01
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    25   0.77 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   7.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   7.2  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 172 MVASWVDRFPNTKVDDILEKLAKENSKYF 86
           ++ S++D F N     ++EK+ KEN K F
Sbjct: 149 VLKSFIDLF-NANARSVVEKMRKENGKEF 176


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 12/42 (28%), Positives = 14/42 (33%)
 Frame = -1

Query: 642 KKPKTSHTLTGSACCGTEPLRRPKCTNPPLRLGCRRTPAHVS 517
           K P   H       C   P + P       R   RRTP + S
Sbjct: 378 KNPAMGHWQMSCVACSPPPRQTPPSRKESGRRRRRRTPRYNS 419


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 393 MIFLPSVARRSFCSVNRRFFP 455
           +++ P    +S CS++  FFP
Sbjct: 141 VVWQPPAVYKSSCSIDVEFFP 161


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = +3

Query: 393 MIFLPSVARRSFCSVNRRFFP 455
           +++ P    +SFC ++  +FP
Sbjct: 133 VVWKPPAIYKSFCEIDVEYFP 153


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,587
Number of Sequences: 438
Number of extensions: 3236
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)