Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_C24
         (863 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.90 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.6  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   6.3  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   6.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   8.4  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 67  LKTRNGNLLYHYVHVHLSAY 126
           +K RNG L+Y+ +  H++AY
Sbjct: 749 MKRRNGALIYNILPPHVAAY 768


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 154 LKDSGSNFADGPAVLG-EIFINNFDSYE 234
           ++ SG N  DGPAV+   IF+ +    +
Sbjct: 47  IRPSGENATDGPAVVRVNIFVRSISKID 74


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 597 SGLPRPCSC 571
           SGLP PC C
Sbjct: 473 SGLPEPCRC 481


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 597 SGLPRPCSC 571
           SGLP PC C
Sbjct: 473 SGLPEPCRC 481


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 154 LKDSGSNFADGPAVL 198
           ++ SG N  DGPA++
Sbjct: 47  IRPSGENATDGPAIV 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,902
Number of Sequences: 438
Number of extensions: 3285
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)