Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_C16
         (835 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   3.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   3.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.6  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   8.0  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   8.0  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   8.0  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   8.0  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -3

Query: 167 VILVLRFVTSVMSCWLFLMKANLYRTTFFFSRSIKVFDYI 48
           ++L++  V +    W+F    +L   +  F  S+ +FD I
Sbjct: 66  MLLIMSLVGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDII 105


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +2

Query: 647 LGELHLVHALAGVQC 691
           LG+ +L++A+AG QC
Sbjct: 661 LGKAYLMYAIAGSQC 675


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -3

Query: 167 VILVLRFVTSVMSCWLFLMKANLYRTTFFFSRSIKVFDYI 48
           ++L++  V +    W+F    +L   +  F  S+ +FD I
Sbjct: 66  MLLIMSLVGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDII 105


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 497 ITPFPSLAFREIHNTFAFRIYIVTSI 420
           + PFP+ AFR+  ++ A+R     S+
Sbjct: 89  LLPFPAAAFRQDVHSAAYRCVASNSV 114



 Score = 22.6 bits (46), Expect = 4.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 636 LLSASVNSISSMPSPVXNAKNLAPEHSGNXXXMXLN 743
           L SA+++ +    S + +  NLA EHSG+   +  N
Sbjct: 659 LASANISQLDPYSS-LLSITNLAAEHSGDYTCVAAN 693


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 497 ITPFPSLAFREIHNTFAFRIYIVTSI 420
           + PFP+ AFR+  ++ A+R     S+
Sbjct: 89  LLPFPAAAFRQDVHSAAYRCVASNSV 114


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 444 SYLYSNFNSFRLQHA**NNLGSTRYVAVTGCVYIP 340
           +Y YSN+N++   +   NN    +Y  +     IP
Sbjct: 88  NYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIP 122


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 444 SYLYSNFNSFRLQHA**NNLGSTRYVAVTGCVYIP 340
           +Y YSN+N++   +   NN    +Y  +     IP
Sbjct: 88  NYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIP 122


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 444 SYLYSNFNSFRLQHA**NNLGSTRYVAVTGCVYIP 340
           +Y YSN+N++   +   NN    +Y  +     IP
Sbjct: 88  NYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIP 122


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 444 SYLYSNFNSFRLQHA**NNLGSTRYVAVTGCVYIP 340
           +Y YSN+N++   +   NN    +Y  +     IP
Sbjct: 88  NYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIP 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,618
Number of Sequences: 438
Number of extensions: 3302
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)