Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_C13
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.8  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   2.4  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   4.3  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    22   5.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   5.6  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   7.4  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   7.4  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.8  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 286 IEPIENLTEAFHVG-QIVSCTILNVDIENK 200
           I P++N+TE  HV   +    ++NV+ +N+
Sbjct: 42  IRPVQNMTEKVHVNFGLAFVQLINVNEKNQ 71


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -2

Query: 178 PTQTFRINRNVKPKRSTIQSEKRGKPKTREQHKLMRKKINQK 53
           PT+  R+ R  KP+     +     P+ R  H  +R++   K
Sbjct: 26  PTRPARLRREAKPEAEPGNNRPIYIPQPRPPHPRLRREAEPK 67


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/45 (17%), Positives = 24/45 (53%)
 Frame = -1

Query: 182 HTDADLSDQQKRKAKEKHDSIGEERETEDEGATQINEEKDKPKNK 48
           H     ++QQ+++ ++  +   E+RE  D   +Q  +++ + + +
Sbjct: 56  HRQHSKNEQQRKEMEQMREREREQREHSDRVTSQQQQQQQQQQQQ 100


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -2

Query: 178 PTQTFRINRNVKPKRSTIQSEKRGKPKTREQHKLMRKK 65
           PT+  R+ R  KP+     +     P+ R  H  +R++
Sbjct: 25  PTRPTRLRREAKPEAEPGNNRPVYIPQPRPPHPRLRRE 62


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 119 GEERETEDEGATQINEEKDKPKNK 48
           G++R+  D    +I EEK K KNK
Sbjct: 450 GKDRKIMDMVREKIIEEKRKNKNK 473


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 15/74 (20%), Positives = 31/74 (41%)
 Frame = -1

Query: 266 NRGLPCRTDCELHDTECGYREQETAGQPHTDADLSDQQKRKAKEKHDSIGEERETEDEGA 87
           +  L  RT    H +    RE+  +   + +    D+Q  K   + + + EER +    +
Sbjct: 203 SNSLRSRTHGFQHTSSRYSRERSCSRDRNREYRKKDRQYEKLHNEKEKLLEERTSRKRYS 262

Query: 86  TQINEEKDKPKNKQ 45
                E++  KN++
Sbjct: 263 RSREREQNSYKNER 276


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 15/74 (20%), Positives = 31/74 (41%)
 Frame = -1

Query: 266 NRGLPCRTDCELHDTECGYREQETAGQPHTDADLSDQQKRKAKEKHDSIGEERETEDEGA 87
           +  L  RT    H +    RE+  +   + +    D+Q  K   + + + EER +    +
Sbjct: 214 SNSLRSRTHGFQHTSSRYSRERSCSRDRNREYRKKDRQYEKLHNEKEKLLEERTSRKRYS 273

Query: 86  TQINEEKDKPKNKQ 45
                E++  KN++
Sbjct: 274 RSREREQNSYKNER 287


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 517 GGTAGPREGAVP 482
           GG  GPR G +P
Sbjct: 148 GGNGGPRNGLLP 159


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 517 GGTAGPREGAVP 482
           GG  GPR G +P
Sbjct: 148 GGNGGPRNGLLP 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,250
Number of Sequences: 438
Number of extensions: 3742
Number of successful extensions: 19
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)