Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_C11
         (817 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.6  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   5.9  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/54 (18%), Positives = 25/54 (46%)
 Frame = +1

Query: 409 WSQAAFVAVGDFENVNKQNEINLITVCVLYVSPIIPYM*MTIPHSRFLYSRHNY 570
           ++   F+    F+ +    +  +   C+   + +IP + + + +SR L S  N+
Sbjct: 197 YTTEGFLTTCSFDFLTDDEDTKVFVTCIFIWAYVIPLIFIILFYSRLLSSIRNH 250


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/54 (18%), Positives = 25/54 (46%)
 Frame = +1

Query: 409 WSQAAFVAVGDFENVNKQNEINLITVCVLYVSPIIPYM*MTIPHSRFLYSRHNY 570
           ++   F+    F+ +    +  +   C+   + +IP + + + +SR L S  N+
Sbjct: 197 YTTEGFLTTCSFDFLTDDEDTKVFVTCIFIWAYVIPLIFIILFYSRLLSSIRNH 250


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = -1

Query: 667 MYTGPAVYSSRRVWACAHT--RTVKALYS--PGYMFRNCVANTETVNV 536
           M T P+VYS  R  A  HT  R     YS  P ++F +    T+T  V
Sbjct: 191 METFPSVYSKTRRRALEHTLDRFHNDKYSNVPYFLFGDFNFRTDTAGV 238


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,691
Number of Sequences: 438
Number of extensions: 4194
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)