Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_C10
         (841 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.5  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    24   2.0  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -3

Query: 479 HHRH--RVTRPVLVPHRIHHLHHQIRVIQKVLGRRSVVLN 366
           HH+H      P + P   HH HHQ + +Q +  R+   L+
Sbjct: 335 HHQHGNHTMGPTMGPPHHHH-HHQTQSLQHLHYRQPPTLS 373


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = -2

Query: 333 LSKRMAM----LGDGDSTSRTHNSQFNHPYGYQPPVQTADDIAAQPPPRSQADID 181
           LSKR ++    LG   STS T +S+ +      P V  +D++       +Q+D D
Sbjct: 167 LSKRRSVSECSLGTASSTSSTASSRNSDRSAGSPSVSESDEVDVIGYTSNQSDTD 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,273
Number of Sequences: 438
Number of extensions: 2110
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)