Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_B24
         (947 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   5.3  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   7.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   9.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 101  PQQP*VSPHRNPGIHVLKLPRLVNLTP 21
            PQ+P  SP   PG + +K+P  +   P
Sbjct: 1128 PQKPFTSPGGIPGPNGIKMPSFMEGMP 1154


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 264 IKIKIRRTSLHEPKITPVPVP 202
           I I+ RR   H+P    +PVP
Sbjct: 39  ITIEPRRRKFHKPITLTIPVP 59


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 7/36 (19%), Positives = 16/36 (44%)
 Frame = -3

Query: 642 VVVSIGIMMKKCKMQRKNNELRRRRKMWRKCLNKKK 535
           +++ +     + + Q+K    R     WR  + K+K
Sbjct: 841 IIIEVAYKKHQIRKQKKMELARHAADKWRGAIEKRK 876


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,959
Number of Sequences: 438
Number of extensions: 3007
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31081323
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)