Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_B11
         (838 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       26   0.50 
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   3.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.1  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 25.8 bits (54), Expect = 0.50
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -1

Query: 403 IHLN*YFFVRSKSKFAIENL*QKRYSEGVKNGCEPIINRKKKTDF 269
           +  N Y   R+K K  ++ + ++    G   G    +  KKK DF
Sbjct: 422 VEQNFYEVARNKKKDLLKEILERENDSGTLGGTLVFVEMKKKADF 466


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 647 RRVRPHYNIALVRILTCY*LTASXSTFPCGQTTLNQ 754
           +R+RP  N        CY LT +  +  C  TT+ +
Sbjct: 205 KRMRPAANWGYYAYPYCYNLTPNQPSAQCEATTMQE 240


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 157 NRIHKFRCKTNIQRTRRV 210
           ++IH +RC+T  + TR+V
Sbjct: 202 DQIHGYRCRTMHRLTRQV 219


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 157 NRIHKFRCKTNIQRTRRV 210
           ++IH +RC+T  + TR+V
Sbjct: 202 DQIHGYRCRTMHRLTRQV 219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,396
Number of Sequences: 438
Number of extensions: 4816
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)