Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_P19
         (847 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      180   1e-47
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   6.2  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  180 bits (439), Expect = 1e-47
 Identities = 97/233 (41%), Positives = 145/233 (62%), Gaps = 4/233 (1%)
 Frame = +1

Query: 7   TRVCFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMG 186
           T V +GG     Q   L  G  I++ATPGRL+DF+EKG        +LVLDEADRMLDMG
Sbjct: 304 TVVAYGGTSVMHQRGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMG 363

Query: 187 FEPQIRKII--EQIRP--DRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNI 354
           F P I K++  E + P  +RQTLM+SAT+P EV+ LA  +L +Y+ + +G +  + +   
Sbjct: 364 FLPSIEKMVDHETMVPLGERQTLMFSATFPDEVQHLARRFLNNYLFLAVGIVGGACSDVE 423

Query: 355 LQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCM 534
               ++ + ++K++ L  +L+    S   G  T++FVE K+KA+ I+  +    +P   +
Sbjct: 424 QNFYEVAR-NKKKDLLKEILERENDSGTLGG-TLVFVEMKKKADFIAVFLSENNYPTTSI 481

Query: 535 HGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIXYVINFDYPNXSED 693
           HGD+ Q++R+E L  FK GR SILVAT VAARGLD+  + +VIN+D P   ++
Sbjct: 482 HGDRLQRQREEALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDE 534


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 466 ETKRKAENISRNIRRYGWPAVCMHGDKTQQERDE 567
           E ++K+    R  R+YG  +     D+T++ER +
Sbjct: 277 EREQKSYKNEREYRKYGETSKERSRDRTERERSK 310


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,379
Number of Sequences: 438
Number of extensions: 3884
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)