Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_P09
         (846 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   285   3e-79
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   285   3e-79

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  285 bits (700), Expect = 3e-79
 Identities = 144/211 (68%), Positives = 160/211 (75%), Gaps = 3/211 (1%)
 Frame = +1

Query: 223 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 402
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 403 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXX 582
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF     
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA 120

Query: 583 XXXXXXXTSLCFVYPLDFARTVSPPMSVRAMASVNLRSRKLHQQXLQVRRSDRXV---QR 753
                  TSLCFVYPLDFART       +A          L     ++ ++D      + 
Sbjct: 121 SGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTG--LGNCLTKIFKADGITGLYRG 178

Query: 754 FGVSVQGIIIYRASYFGFYDTARGMLPDPXK 846
           FGVSVQGIIIYRA+YFGFYDTARGMLPDP K
Sbjct: 179 FGVSVQGIIIYRAAYFGFYDTARGMLPDPKK 209



 Score = 40.7 bits (91), Expect = 2e-05
 Identities = 15/22 (68%), Positives = 20/22 (90%)
 Frame = +2

Query: 689 SGLGNCISXIFKSDGLIGLYRG 754
           +GLGNC++ IFK+DG+ GLYRG
Sbjct: 157 TGLGNCLTKIFKADGITGLYRG 178



 Score = 27.5 bits (58), Expect = 0.16
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 310 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 468
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 645 RLAADVGKGDGQR 683
           RLAADVGK  G+R
Sbjct: 142 RLAADVGKAGGER 154


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  285 bits (700), Expect = 3e-79
 Identities = 144/211 (68%), Positives = 160/211 (75%), Gaps = 3/211 (1%)
 Frame = +1

Query: 223 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 402
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 403 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXX 582
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF     
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA 120

Query: 583 XXXXXXXTSLCFVYPLDFARTVSPPMSVRAMASVNLRSRKLHQQXLQVRRSDRXV---QR 753
                  TSLCFVYPLDFART       +A          L     ++ ++D      + 
Sbjct: 121 SGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTG--LGNCLTKIFKADGITGLYRG 178

Query: 754 FGVSVQGIIIYRASYFGFYDTARGMLPDPXK 846
           FGVSVQGIIIYRA+YFGFYDTARGMLPDP K
Sbjct: 179 FGVSVQGIIIYRAAYFGFYDTARGMLPDPKK 209



 Score = 40.7 bits (91), Expect = 2e-05
 Identities = 15/22 (68%), Positives = 20/22 (90%)
 Frame = +2

Query: 689 SGLGNCISXIFKSDGLIGLYRG 754
           +GLGNC++ IFK+DG+ GLYRG
Sbjct: 157 TGLGNCLTKIFKADGITGLYRG 178



 Score = 27.5 bits (58), Expect = 0.16
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 310 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 468
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 645 RLAADVGKGDGQR 683
           RLAADVGK  G+R
Sbjct: 142 RLAADVGKAGGER 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,906
Number of Sequences: 438
Number of extensions: 4344
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)