Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_L24
         (862 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   6.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   6.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.3  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 68  FNLKEIYANFTLLHRVVKYCQITKHGV 148
           FNL E   N+     V ++ Q+ KHG+
Sbjct: 62  FNLVENLDNYNDKEAVNEFMQLLKHGM 88


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = +1

Query: 640 PTSEVANDLDAVEAFHQQVMNKASVISVSGDAIA 741
           PT E+  +LD     + + +     ++V+GD ++
Sbjct: 421 PTPEITWELDGKRLSNTERLQVGQYVTVNGDVVS 454


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 68  FNLKEIYANFTLLHRVVKYCQITKHGV 148
           FNL E   N+     V ++ Q+ KHG+
Sbjct: 62  FNLVENLDNYNDKEAVNEFMQLLKHGM 88


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 356 LCKVPFLRDKRKP 318
           LC+ P LRD  KP
Sbjct: 505 LCEAPALRDNTKP 517


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,130
Number of Sequences: 438
Number of extensions: 5383
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)