Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_L02
         (821 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   3.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.0  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   6.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.0  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +2

Query: 113 SAEVADNSVDPPAKKRKLNTGEAHSNNSAMANNGARVEDEIDESLYSRQ 259
           ++ + DN    P +    N+G A  NN   +++GA   D    S  S +
Sbjct: 233 NSPLEDNIKCEPLELTGGNSGNAAGNNEDSSDSGAAASDRPPASASSNE 281



 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 280 VVAQHVELARVQTLVDFIFH 221
           +V Q V  + +  LV+FI+H
Sbjct: 71  IVLQDVAFSDLHALVEFIYH 90


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 310 DIRTRHSTHSVVAQHVELARVQTLVD 233
           D RTRH +  VVA   E   +  ++D
Sbjct: 338 DRRTRHLSDRVVALEAEKKNLSKVID 363


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 420 LSSQFYLSETVIGQNRALNIVRTTF 494
           L+S+   + TV+G   ALNIV  +F
Sbjct: 163 LTSELTAASTVLGFFPALNIVADSF 187


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 182 ALLLYLVSAFSPGGQ 138
           AL+LYL+  FSP G+
Sbjct: 580 ALVLYLLDRFSPFGR 594


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,638
Number of Sequences: 438
Number of extensions: 4670
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)