Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_K02
         (838 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    27   0.21 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    25   1.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   8.1  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   8.1  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
            ORF for hypotheticalprotein. ).
          Length = 998

 Score = 27.1 bits (57), Expect = 0.21
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -3

Query: 164  LPELSSDLVAALTSLDMYDFPHFVLFM*TINY--LTLKICSARSTH 33
            L E + +L  AL+S++   F HFVL M  IN+  +T  +  AR  H
Sbjct: 870  LVEFALELKKALSSINEQSFNHFVLKM-GINHGPVTAGVIGARKPH 914


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = +1

Query: 436 VDSVLDVVRKEAESCDCLQXIPT 504
           +DS+++++R   ++CD L  + T
Sbjct: 106 IDSIINIIRVRVDACDRLWGVDT 128


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 788 DXRWFRSPYVGGIVLACG 735
           + +WF  P V G+V  CG
Sbjct: 269 ELKWFAVPAVSGMVFDCG 286


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = -1

Query: 367 SCPDGRSVRKVQSGQSPWCRAPSRXRMARGTY 272
           + P G +   + S   PW R+    +  R TY
Sbjct: 246 AAPQGAASANLPSPLYPWMRSQFERKRGRQTY 277


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -3

Query: 779 WFRSPYVGGIVLACGSRYXREPRCRYSRF 693
           W R   +GG  L  G  Y R  R  Y R+
Sbjct: 144 WPRGKNLGGTTLHHGMAYHRGHRKDYERW 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,507
Number of Sequences: 438
Number of extensions: 4008
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)