Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_I24
         (870 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    27   0.30 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   8.5  

>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 114 LTFLQLSTFVSVRFSKFFQWNFLPWLSDLIH 22
           L F+    +V     KF  WN  P  SDL+H
Sbjct: 13  LAFIAEEGYVPSMREKFLGWNVPPEYSDLVH 43


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 114 LTFLQLSTFVSVRFSKFFQWNFLPWLSDLI 25
           L F+    +V     KF  WN  P  SDL+
Sbjct: 13  LAFIAEEGYVPSMREKFLGWNVPPEYSDLV 42


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 344  FGKRHFVSGW*SSLH 388
            F  RHF+SG  S+LH
Sbjct: 986  FEHRHFISGIDSNLH 1000


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -3

Query: 628  CGNI*RHGASNFIFFGIIESSPFLVLPGWPTQPMI 524
            C N  R  +     +  + S+P   +P  P  PMI
Sbjct: 935  CSNYLREISDGEPLYVFVRSAPNFYMPSEPKAPMI 969


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,805
Number of Sequences: 438
Number of extensions: 3812
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)