Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_H02
         (796 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    25   1.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   4.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   4.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.7  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            22   7.5  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +3

Query: 477 LNKCIAQLMWGRGLPVTDIGPTLXNLQRLL 566
           + KC+ + + G+G+ V  I P +  ++ L+
Sbjct: 19  IGKCLIECLVGKGMKVIGIAPQVDKMKTLV 48


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 118 ASSRRAPQFCLVSLSESVRRDNV**FSINSEPN 20
           AS +++P F   +L+  +  DNV  FS  +E N
Sbjct: 467 ASLKKSPYFKEANLNTRMLNDNVFAFSRETEDN 499


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 118 ASSRRAPQFCLVSLSESVRRDNV**FSINSEPN 20
           AS +++P F   +L+  +  DNV  FS  +E N
Sbjct: 467 ASLKKSPYFKEANLNTRMLNDNVFAFSRETEDN 499


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -1

Query: 529 SVTGSPRPHISWAM 488
           S  G+P P ++WA+
Sbjct: 444 SAAGNPTPQVTWAL 457


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -1

Query: 529 SVTGSPRPHISWAM 488
           S  G+P P ++WA+
Sbjct: 444 SAAGNPTPQVTWAL 457


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 435 ERTAGCLDLGDRVFRPVSCWRIRGGLSCS 349
           E  + C D+ +   RP S W I G +S S
Sbjct: 637 ETHSACRDIPEEFLRPESGWAI-GAMSFS 664


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 523 TGSPRPHISW 494
           TG PRP I+W
Sbjct: 47  TGFPRPEITW 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,088
Number of Sequences: 438
Number of extensions: 4744
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)