Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_F24
         (926 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.97 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.97
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = +1

Query: 550 QALPRQGARAPALPSREAR----PLPRQGSSAPTLPRGETRAIPRR 675
           Q  P  GA  P +P+        PLP    S PT+P   + A P R
Sbjct: 408 QLPPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMPSMAGPIR 453


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +1

Query: 439 RQTRAISREGVR*GSRPRSRAIPSRKEGALSRTRTS*QALPRQGARAPALPS 594
           +Q++A S++  + G  PR +    + +G ++   +  Q    QGA +  LPS
Sbjct: 208 QQSQAASQQS-QPGMHPRQQQQAQQHQGVVTSPLSQQQQAAPQGAASANLPS 258


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 523  ALSRTRTS*QALPRQGARAPALPSR 597
            A + +R+  Q++PRQ  R   +PS+
Sbjct: 1769 ASAHSRSGSQSMPRQNGRYSRVPSQ 1793


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,059
Number of Sequences: 438
Number of extensions: 3867
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)