Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_F23
         (993 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   5.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   9.9  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   9.9  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = +1

Query: 631 NQTTSSLWLXHFVYEKAKLLDMSFIPME 714
           + T   +WL H ++  +  +D+ F P +
Sbjct: 114 SHTGEVVWLSHGIFRSSCDIDVEFFPFD 141


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 166 SVNKTIKSSNQLPMSSSYD 222
           S N+ IKS  + P SSS D
Sbjct: 93  SDNENIKSQKEFPNSSSSD 111


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +1

Query: 499 KPVISEKKMGSTIFIGTKNIPRPQLTFKDTIDNSENLWV 615
           KP+ + K++ S I  G  N+ R   T     D+    W+
Sbjct: 44  KPLWTGKQISSLIIPGNVNMIRTHSTXPXEEDDGPYKWI 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.129    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,516
Number of Sequences: 438
Number of extensions: 3998
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32895408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)