Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_F21
         (864 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    43   3e-06
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.6  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   8.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   8.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   8.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   8.4  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 43.2 bits (97), Expect = 3e-06
 Identities = 21/47 (44%), Positives = 28/47 (59%)
 Frame = +2

Query: 488 VGGEDAKRAEFPFMALLGFGASAXEAXWLCGGSVLSARYILTAAHCI 628
           VGG +    EFP MA +       E   +CG +++S RY+LTAAHCI
Sbjct: 162 VGGTNTGINEFPMMAGI---KRTYEPGMICGATIISKRYVLTAAHCI 205


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +2

Query: 317  RRYSRLEKTNKKSWDACIDYVLNIPEYFCTSTVTFNFNKAWDSEKKCHKISITAQSPVGG 496
            +RY    K +K SW+  ID VL +P         FN   A       + + I A++ +G 
Sbjct: 907  KRYVIEYKISKGSWETDIDRVL-VPGSQQNVAGVFNLRPA-----TTYHLRIVAENEIGA 960

Query: 497  ED 502
             D
Sbjct: 961  SD 962


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +2

Query: 227 PPVCGLRGKEPIVCCTDC 280
           PP     G   IV CT+C
Sbjct: 413 PPTGATTGPNEIVTCTNC 430


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +2

Query: 227 PPVCGLRGKEPIVCCTDC 280
           PP     G   IV CT+C
Sbjct: 399 PPTGATTGPNEIVTCTNC 416


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +2

Query: 227 PPVCGLRGKEPIVCCTDC 280
           PP     G   IV CT+C
Sbjct: 433 PPTGATTGPNEIVTCTNC 450


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +2

Query: 227 PPVCGLRGKEPIVCCTDC 280
           PP     G   IV CT+C
Sbjct: 382 PPTGATTGPNEIVTCTNC 399


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,655
Number of Sequences: 438
Number of extensions: 3442
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)