Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_F17
         (844 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   4.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   8.1  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 607 SWPRVVRAGVSESGFGFVASSCVNAVYWRSV 515
           +W      GV+  G G VAS   +A  W+S+
Sbjct: 907 TWSNSQVQGVAVPGSGIVASGQQHAGGWQSI 937


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -3

Query: 497 DGLLRRFREVGRLDVLLNSDKGLFQSVERARVQHLLLNLGGVRAPRHQ-EELLFLASLR 324
           +GL    R++  + +  N  + L + +     Q L+LNL G R    + +E  FL  +R
Sbjct: 278 EGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNRLGSDRVDETTFLGLIR 336


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
 Frame = +3

Query: 495 VEEKLRATDRQ*TAFTHELATKPNPLSDTPALTTRGHDTTSRLVLLQRKTN-SINMIDFT 671
           + +K++ T          L  +   +   P +T  GH    +  LL    N SI   +F 
Sbjct: 117 ISKKIKKTMENKDITKRPLPNESQLIKRHPIVTIMGHVDHGKTTLLDALRNTSIAKSEF- 175

Query: 672 GGRTSCESA 698
           GG T C  A
Sbjct: 176 GGITQCIGA 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,964
Number of Sequences: 438
Number of extensions: 4674
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)