Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_F12
         (849 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    40   4e-05
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   4.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   4.7  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 39.5 bits (88), Expect = 4e-05
 Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 8/135 (5%)
 Frame = +2

Query: 281 VVKEIKDKGGVAV---ADYNSVVEGEKLIKTAIDNFGRIDILINNAGILRDKSFTKMTEQ 451
           +V+E+K K G  V    D ++  +  K+I+    N G IDILINNA I  D +       
Sbjct: 47  LVEELKSKPGKLVPLQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVL 106

Query: 452 DWDLIQAVHLKGAFKTTHAAWETFRKQ--KYGRIVMTSSNAGLF---GNFGQANYSAAKL 616
           DW  I  ++L G         +  +K+    G IV  +  +GL     N  +  Y A+K 
Sbjct: 107 DWKKIFDINLLGLTCMIQEVLKLMKKKGINNGIIVNINDASGLNLLPMNRNRPAYLASKC 166

Query: 617 GLVGLANTLAIEGAK 661
            L  L + L  E A+
Sbjct: 167 ALTTLTDCLRSELAQ 181


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 130 TQLIHPRRCTETK 92
           T L+HP RCT+ K
Sbjct: 13  TFLLHPSRCTQGK 25


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 130 TQLIHPRRCTETK 92
           T L+HP RCT+ K
Sbjct: 13  TFLLHPSRCTQGK 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,623
Number of Sequences: 438
Number of extensions: 4533
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)