Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_F11
         (842 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    27   0.29 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   4.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   8.1  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   8.1  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   8.1  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 323 VIFNLVQISHLTVTVHRYGDLHQFG 249
           V+ N+++ S L+   + YGDLH FG
Sbjct: 344 VLGNIMEASILSPNQNVYGDLHNFG 368


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 611 TRAGLGSHRQAKRKAGIGRDLGQSRHAVVH 700
           TR GL  H ++KR+  +   +GQ R    H
Sbjct: 125 TRQGLTLHYRSKRRGFVYYTMGQIREVARH 154


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 86  VLSCQIFEV-IYSVLDIKVSNSYNPXQDDGASATSM 190
           VL  +I +V + ++LD KVS      +DD  S  S+
Sbjct: 348 VLKSKIGQVFLITILDSKVSARIEMNEDDNTSLVSL 383


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 660  SGEISVSPGTPLSMEIFLNNESASV 734
            S +I   PGT    E+F+N E   V
Sbjct: 1514 SDKIKFVPGTTSQPEVFVNGEKIVV 1538


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -1

Query: 86  QNGDTKNTFVGGVR 45
           ++G+TK+ F+ G+R
Sbjct: 342 EDGETKSRFISGIR 355


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 706 ISMDNGVPGLTEISPDTCFP 647
           ISM   +P    I P T FP
Sbjct: 383 ISMQEQIPRFRHIGPSTPFP 402


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 468 NGNREAISVRCVLSGKHHNLTKRDSRAFPFDFDEPN 575
           N  R  +S R  +   + N  +  ++  PF+ D PN
Sbjct: 21  NDKRIYLSPRTPIKNVYKNNIETKNQLSPFNIDTPN 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,317
Number of Sequences: 438
Number of extensions: 5294
Number of successful extensions: 30
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)