Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_F08
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    25   1.2  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   3.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   3.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.5  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    22   8.6  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +3

Query: 249 PRIYLNKMIL--CAVVMTMLWTAGXLYIKPIPKFWNAEKVKSFIQDKC 386
           P  Y +KM     AV++ ++W        P   +W A + +   +DKC
Sbjct: 151 PFTYPSKMSRRRAAVLIAIVWICSSAISFPAIVWWRAVRTEEVPEDKC 198


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +3

Query: 339 KFWNAEKVKSFIQDKCKSRTIPENIKFVLLFIEDNGDPSCLVKFAN 476
           KF + +K   F +    +R + +N+       EDNG    ++ F+N
Sbjct: 465 KFASLKKSPYFKEANLNTRMLNDNVFAFSRETEDNGSLYAILNFSN 510


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +3

Query: 339 KFWNAEKVKSFIQDKCKSRTIPENIKFVLLFIEDNGDPSCLVKFAN 476
           KF + +K   F +    +R + +N+       EDNG    ++ F+N
Sbjct: 465 KFASLKKSPYFKEANLNTRMLNDNVFAFSRETEDNGSLYAILNFSN 510


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +2

Query: 197 YSYFVMYGRSRSRSPVRSKNLSKQNDIVRRRNDNVMD 307
           Y Y    G + S S V  K   ++   + R+N + +D
Sbjct: 142 YFYSKSNGSNSSNSDVLFKQNKEEEQTINRKNSDYLD 178


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +2

Query: 563 SIQQEKEYEQKHL*TFETENSVKPENARLPK 655
           S Q E  ++  ++  FET N +  + +  PK
Sbjct: 31  SQQLEVNFDGNYINNFETSNGISHQESGQPK 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,942
Number of Sequences: 438
Number of extensions: 5007
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)