Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_E05
(837 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 321 4e-88
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 321 4e-88
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 274 8e-74
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 234 7e-62
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 149 2e-36
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 117 1e-26
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 103 1e-22
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 2e-13
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 42 8e-04
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 31 1.2
SB_52505| Best HMM Match : DUF963 (HMM E-Value=0.81) 30 2.7
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46) 29 3.5
SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88) 29 3.5
SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3) 29 3.5
SB_19079| Best HMM Match : LCM (HMM E-Value=6.3e-37) 29 4.7
SB_58645| Best HMM Match : Kelch_1 (HMM E-Value=1.9) 29 4.7
SB_51476| Best HMM Match : Ion_trans (HMM E-Value=6.29996e-41) 29 4.7
SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026) 29 4.7
SB_24093| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-13) 29 4.7
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 29 6.2
SB_9053| Best HMM Match : TIG (HMM E-Value=0) 29 6.2
SB_47305| Best HMM Match : I-set (HMM E-Value=0) 29 6.2
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_24060| Best HMM Match : GED (HMM E-Value=0.52) 29 6.2
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 321 bits (789), Expect = 4e-88
Identities = 152/184 (82%), Positives = 167/184 (90%)
Frame = +2
Query: 146 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRK 325
VGVFQHGKVEIIANDQGNRTTPSYVAF+DTERLIGDAAKNQVAMNP NT+FDAKRLIGRK
Sbjct: 18 VGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVAMNPENTVFDAKRLIGRK 77
Query: 326 FEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGK 505
F+D V DM HWPF V+ +G +PKI+V +KGE K+FFPEE+SSMVLTKMKETAEAYLG
Sbjct: 78 FDDPVVARDMTHWPFHVIREGERPKIQVEFKGEKKSFFPEEISSMVLTKMKETAEAYLGA 137
Query: 506 TVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLI 685
V +AV+TVPAYF+DSQRQATKDAGTI+GLNVLRIINEPTAAAIAYGLDKK ERNVLI
Sbjct: 138 KVTDAVVTVPAYFHDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGVERNVLI 197
Query: 686 FDLG 697
+DLG
Sbjct: 198 YDLG 201
Score = 50.0 bits (114), Expect = 2e-06
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +3
Query: 696 GGGTFDVSILTIEDGIFEVKSTXG 767
GGGTFDVS+LTIEDGIFEVKST G
Sbjct: 201 GGGTFDVSVLTIEDGIFEVKSTAG 224
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 321 bits (789), Expect = 4e-88
Identities = 151/184 (82%), Positives = 170/184 (92%)
Frame = +2
Query: 146 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRK 325
VGVFQ+GKVEIIANDQGNRTTPSYV FTDTERL+GDAAKNQVA+NP NTIFDAKRLIGR+
Sbjct: 18 VGVFQNGKVEIIANDQGNRTTPSYVGFTDTERLVGDAAKNQVALNPENTIFDAKRLIGRR 77
Query: 326 FEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGK 505
++DATVQ+DMK WPF+++SD KPKI+V YKGE KTF EE+SSMVL KMKETAEAYLG+
Sbjct: 78 YDDATVQSDMKLWPFKIISDNNKPKIQVEYKGERKTFAAEEISSMVLGKMKETAEAYLGQ 137
Query: 506 TVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLI 685
V +AVITVPAYFNDSQRQATKDAGTI+GLNVLR+INEPTAAA+AYGLDK +GE+NVLI
Sbjct: 138 KVTSAVITVPAYFNDSQRQATKDAGTIAGLNVLRVINEPTAAALAYGLDKSLSGEKNVLI 197
Query: 686 FDLG 697
FDLG
Sbjct: 198 FDLG 201
Score = 44.0 bits (99), Expect = 2e-04
Identities = 21/25 (84%), Positives = 23/25 (92%), Gaps = 1/25 (4%)
Frame = +3
Query: 696 GGGTFDVSILTIEDG-IFEVKSTXG 767
GGGTFDVSILTI+DG +FEVKST G
Sbjct: 201 GGGTFDVSILTIDDGSLFEVKSTAG 225
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 274 bits (671), Expect = 8e-74
Identities = 132/185 (71%), Positives = 157/185 (84%), Gaps = 1/185 (0%)
Frame = +2
Query: 146 VGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPNNTIFDAKRLIGR 322
VGVF++G+VEIIANDQGNR TPSYVAFT+ ERLIGD AKNQ+ NP NT+FDAKRLIGR
Sbjct: 715 VGVFKNGRVEIIANDQGNRITPSYVAFTEEGERLIGDGAKNQLTTNPENTVFDAKRLIGR 774
Query: 323 KFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLG 502
++D +VQ D+K +PF+VV KP ++V K E KTF EE+S+MVLTKMKETAEAYLG
Sbjct: 775 SWDDTSVQNDLKFFPFKVVDKNKKPHVQVKVKDEIKTFAAEEISAMVLTKMKETAEAYLG 834
Query: 503 KTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVL 682
K V +AV+TVPAYFND+QRQATKDAG I+GL V+RIINEPTAAAIAYG+DKK GE+N+L
Sbjct: 835 KKVTHAVVTVPAYFNDAQRQATKDAGAIAGLTVMRIINEPTAAAIAYGMDKK-EGEKNIL 893
Query: 683 IFDLG 697
+FDLG
Sbjct: 894 VFDLG 898
Score = 41.9 bits (94), Expect = 6e-04
Identities = 17/24 (70%), Positives = 22/24 (91%)
Frame = +3
Query: 696 GGGTFDVSILTIEDGIFEVKSTXG 767
GGGTFDVS+LTI++G+FEV +T G
Sbjct: 898 GGGTFDVSLLTIDNGVFEVVATNG 921
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 234 bits (572), Expect = 7e-62
Identities = 121/170 (71%), Positives = 131/170 (77%), Gaps = 25/170 (14%)
Frame = +2
Query: 146 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRK 325
VGVFQHGKVEIIANDQGNRTTPSYVAFTD ERL+GDAAKNQVAMNP NTIFDAKRLIGR+
Sbjct: 18 VGVFQHGKVEIIANDQGNRTTPSYVAFTDEERLVGDAAKNQVAMNPTNTIFDAKRLIGRR 77
Query: 326 FEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEV------------------ 451
F+D V+ DMKHW FEVV++ G+PK+KV YKGE KTFF EEV
Sbjct: 78 FDDPGVKDDMKHWSFEVVNEAGRPKVKVEYKGETKTFFAEEVVNEAGRPKVKVEYKGETK 137
Query: 452 -------SSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAG 580
SSMVL KMKETAEAYLG V +AV+TVPAYFNDSQRQATKDAG
Sbjct: 138 TFFAEEISSMVLNKMKETAEAYLGCKVTDAVVTVPAYFNDSQRQATKDAG 187
Score = 144 bits (350), Expect = 6e-35
Identities = 72/84 (85%), Positives = 76/84 (90%)
Frame = +2
Query: 446 EVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPT 625
++SSMVL KMKETAEAYLG V +AV+TVPAYFNDSQRQATKDAG ISGLNVLRIINEPT
Sbjct: 211 QISSMVLNKMKETAEAYLGCKVTDAVVTVPAYFNDSQRQATKDAGVISGLNVLRIINEPT 270
Query: 626 AAAIAYGLDKKGTGERNVLIFDLG 697
AAAIAYGLDKK ERNVLIFDLG
Sbjct: 271 AAAIAYGLDKKVGQERNVLIFDLG 294
Score = 48.4 bits (110), Expect = 7e-06
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +3
Query: 696 GGGTFDVSILTIEDGIFEVKSTXG 767
GGGTFDVS+L+IEDGIFEVKST G
Sbjct: 294 GGGTFDVSVLSIEDGIFEVKSTHG 317
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 149 bits (362), Expect = 2e-36
Identities = 81/187 (43%), Positives = 114/187 (60%), Gaps = 3/187 (1%)
Frame = +2
Query: 146 VGVFQ--HGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIG 319
VG +Q G+++I +++ ++ PS VAFTD L+G+ A +Q +NP NTI+DAKR IG
Sbjct: 45 VGAYQAISGRIDIFSDENDDKVVPSLVAFTDKGVLVGEKALSQAEINPKNTIYDAKRFIG 104
Query: 320 RKFEDATVQADMKHWPFEVVSDG-GKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAY 496
+ F + K + F V +D G V KG PEE+ V+ K++ AE
Sbjct: 105 KTFTKQELLEIGKLYQFRVTTDKRGNAGFLVGKKGNFTVITPEEIGGYVIKKLRTMAERN 164
Query: 497 LGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERN 676
L TV AV++VPA F+ QR AT A +++G+ VLR+INEPTAAA+AYGL KK G N
Sbjct: 165 LTTTVTKAVMSVPAEFDIKQRNATVKAASLAGITVLRVINEPTAAALAYGLHKK-EGVAN 223
Query: 677 VLIFDLG 697
V++ DLG
Sbjct: 224 VMVVDLG 230
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 696 GGGTFDVSILTIEDGIFEVKSTXG 767
GGGT DVS+L I+ G+F + G
Sbjct: 230 GGGTLDVSLLNIQGGMFVTMAMAG 253
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 117 bits (282), Expect = 1e-26
Identities = 62/149 (41%), Positives = 90/149 (60%), Gaps = 4/149 (2%)
Frame = +2
Query: 278 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVS-DGGKPKIKVAYKGEDKTFFPEEVS 454
N NTI KR IGRKF D VQ ++ H P++VV I+V Y G+ + F PE+V
Sbjct: 118 NLKNTISQFKRFIGRKFSDPAVQKEIPHLPYKVVELPNDSIGIQVQYLGKQEVFSPEQVM 177
Query: 455 SMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAA 634
+M+ T++K TAE L V + VI+VP+Y+ D QR+ DA +GLN LR++N+ TA +
Sbjct: 178 AMLFTRLKTTAEIALKTKVTDCVISVPSYYTDRQRRCMLDASATAGLNCLRLMNDTTAVS 237
Query: 635 IAYGLDKKG---TGERNVLIFDLGRRYLR 712
+AYG+ K+ RNV+ D+G L+
Sbjct: 238 LAYGIYKQDLPTDKPRNVVFVDIGHSSLQ 266
Score = 42.7 bits (96), Expect = 4e-04
Identities = 18/41 (43%), Positives = 28/41 (68%)
Frame = +2
Query: 146 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ 268
+ V + G +E +AN+ +R TPS+V+ D +RLIG + KNQ
Sbjct: 15 IAVARGGGIETVANEFSDRCTPSFVSLGDKQRLIGTSGKNQ 55
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 103 bits (248), Expect = 1e-22
Identities = 63/118 (53%), Positives = 78/118 (66%), Gaps = 26/118 (22%)
Frame = +2
Query: 401 IKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAG 580
I V GE ++F PE++S++VL ++K AEA+LG+ V+ AVITVPA+FND+QRQATKDAG
Sbjct: 2 IAVEVCGEKRSFAPEQISAVVLEQLKADAEAFLGQAVKRAVITVPAHFNDAQRQATKDAG 61
Query: 581 TISGLN------------------------VLRIINEPTAAAIAYGLDKK--GTGERN 676
TI+GL+ VLRIINEPTAAAIAYGLDK G ERN
Sbjct: 62 TIAGLDVLSRTASERPPSRFRRRRPHGRSRVLRIINEPTAAAIAYGLDKARGGKAERN 119
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 73.3 bits (172), Expect = 2e-13
Identities = 38/105 (36%), Positives = 63/105 (60%), Gaps = 4/105 (3%)
Frame = +2
Query: 395 PKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKD 574
P +K Y+ D TF PEE+ M+L + E + +++ V+TVP +FN ++R+A
Sbjct: 68 PHVK-NYQQSDVTFTPEELMGMILNHSRFIGEQFADHPIKDVVLTVPPFFNQAERRALLR 126
Query: 575 AGTISGLNVLRIINEPTAAAIAYGLDKK----GTGERNVLIFDLG 697
A + GLNVL+I+N TA A+ YGL ++ T E++ + +D+G
Sbjct: 127 AAELVGLNVLQIMNSNTAVALNYGLFQQKSFNDTLEKHFMFYDMG 171
>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 41.9 bits (94), Expect = 6e-04
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +3
Query: 696 GGGTFDVSILTIEDGIFEVKSTXG 767
GGGTFD+SIL I+ G+FEVK+T G
Sbjct: 8 GGGTFDISILEIQKGVFEVKATNG 31
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 41.5 bits (93), Expect = 8e-04
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +2
Query: 164 GKVEIIANDQGNRTTPSYVAFTDTERLI 247
G IIAND G+R TP+ VAF+DTE+LI
Sbjct: 83 GNTTIIANDAGDRVTPAMVAFSDTEKLI 110
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/25 (60%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +2
Query: 173 EIIANDQGNRTTPSYVAFT-DTERL 244
++I N +G+RTTPS VAFT + ERL
Sbjct: 7 KVIENAEGSRTTPSVVAFTPEGERL 31
>SB_52505| Best HMM Match : DUF963 (HMM E-Value=0.81)
Length = 388
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = -3
Query: 742 IPSSMVRMDTSKVPPPEVKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTC 575
IPSS+V ++ ++P V + S+L + SSS F +S+ + + TC
Sbjct: 319 IPSSLVTRESDRIPSSFVAFESDGIPSSLVTREFDGLSSSLFACESDGIPSSFVTC 374
>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
Length = 572
Score = 29.5 bits (63), Expect = 3.5
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 7/130 (5%)
Frame = -1
Query: 492 ASAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMSACTVASSNLRPM 313
A+ +S +V+ M S + S L TLI PS++TS + ++
Sbjct: 307 ATTMSPSYVANMTTLDSSVSLTRSSLSTTLI----PSISTSILPYNTTVIATPNTTRLVT 362
Query: 312 RRLASNIVLLGFIATWFLAASPMRRSVS----VNAT*DGVVLLPWSLAMIST---FPCWK 154
++S+ V + I+T L S + SV+ +N T + + + +L ST FP
Sbjct: 363 STISSSTVNVSAISTTSLIESTIMASVASSIQLNITSNTTMAVNDTLRTTSTSAVFPTTI 422
Query: 153 TPTPRVXWYP 124
TP+P + YP
Sbjct: 423 TPSPNITSYP 432
>SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
Length = 953
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +1
Query: 181 RQRPGQQDHSVLCCVHRHRASHRRCRQEPGG---DEPQQHNIRCQTSHRT*VRRCYCASR 351
RQ + +++ H R +R+ ++ GG +EP + R T T C+CA R
Sbjct: 267 RQSAPSRSMAIINKTHGKRHGYRKLSRDCGGRRPNEPYERTARVHTILSTDTETCFCAKR 326
>SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3)
Length = 350
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -2
Query: 281 GSSPPGSWRHLR*DARCL*TQHKTEWSCCPGRW 183
GS PPG W R +AR T +T +SC PG W
Sbjct: 206 GSCPPGFWCRKRREARAA-TDLET-YSCPPGFW 236
>SB_19079| Best HMM Match : LCM (HMM E-Value=6.3e-37)
Length = 420
Score = 29.1 bits (62), Expect = 4.7
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 299 RILCCWGSSPPGSWRH 252
R++CC G SP WRH
Sbjct: 395 RVVCCQGDSPSPRWRH 410
>SB_58645| Best HMM Match : Kelch_1 (HMM E-Value=1.9)
Length = 340
Score = 29.1 bits (62), Expect = 4.7
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 299 RILCCWGSSPPGSWRH 252
R++CC G SP WRH
Sbjct: 170 RVVCCQGDSPSPRWRH 185
>SB_51476| Best HMM Match : Ion_trans (HMM E-Value=6.29996e-41)
Length = 823
Score = 29.1 bits (62), Expect = 4.7
Identities = 21/74 (28%), Positives = 32/74 (43%)
Frame = -3
Query: 805 TXRCQXLTSQVXSPXVDFTSKIPSSMVRMDTSKVPPPEVKDKYISFSSTLFVKTVSNRSS 626
T CQ L SP V K P + K+ P D +SF++TLF R+S
Sbjct: 466 TEVCQLLRQM--SPPVGIGKKCPKIVAYKRLIKMNMPLYNDNTVSFTATLFSLV---RTS 520
Query: 625 SRFIDDSENVQARD 584
+ + + N++ D
Sbjct: 521 LKIMTEKNNLREND 534
>SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026)
Length = 1080
Score = 29.1 bits (62), Expect = 4.7
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Frame = +2
Query: 461 VLTKMKETAEAYLGKT----------VQNAVITVPAYFNDSQRQATKDAGTISGLNVLRI 610
V K T+E Y+G T + NA +T+P YF + +K G G+ +
Sbjct: 994 VTRKDNNTSETYVGLTENSFKTRRNKIYNAPLTLPPYFWCHPSRKSKKDGAKEGMAM--A 1051
Query: 611 INEPTAAAIAYGLDKKGTG 667
+++ I+Y LD+K TG
Sbjct: 1052 MSKERNQEISYKLDRKWTG 1070
>SB_24093| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-13)
Length = 305
Score = 29.1 bits (62), Expect = 4.7
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Frame = -1
Query: 306 LASNIVLLGFIATWFLAASPMRRSVSVN---------AT*DGVVL-LPWSLAMISTFPCW 157
L S V F++ FLAA + R V+V T G+++ PW LA IST
Sbjct: 99 LPSFAVFSSFLSVNFLAAVSVERLVAVTFPFYHRVTGKTFYGLLIGTPWLLAGISTVTTV 158
Query: 156 KTPTPRVXWYPDRFLLRVLLPFCIFN 79
PTP + F++ V LP I +
Sbjct: 159 CLPTPVIDISITFFVIYVFLPLLIMS 184
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 28.7 bits (61), Expect = 6.2
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 7/130 (5%)
Frame = -1
Query: 492 ASAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMSACTVASSNLRPM 313
A+ +S +V+ M S + S L TLI PS+ TS + T ++
Sbjct: 1530 ATTMSPSYVANMTTLDSTVSLTRSSLSTTLI----PSIRTSILPYIKTVITTPNTTRLVT 1585
Query: 312 RRLASNIVLLGFIATWFLAASPMRRSVS----VNAT*DGVVLLPWSLAMIST---FPCWK 154
++S+ V + I+T S + SV+ +N T + + + +L ST FP
Sbjct: 1586 STISSSTVNVSAISTTSSIESTIMASVASSIQLNITSNTTMAVNDTLRTTSTSAVFPTTI 1645
Query: 153 TPTPRVXWYP 124
TP+P + YP
Sbjct: 1646 TPSPNITSYP 1655
>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
Length = 2990
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 39 HVC*VVLRTSNKTD*KYKMAKAPAVGIDL 125
HVC +V T K K ++K PA GI+L
Sbjct: 1200 HVCNIVSNTETKITCKLDVSKTPAPGIEL 1228
>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
Length = 5832
Score = 28.7 bits (61), Expect = 6.2
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 10/132 (7%)
Frame = +2
Query: 377 VSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITV------PA 538
++DGG+ KIK + F ++V +K +A GKTV A + V P+
Sbjct: 1157 ITDGGRFKIKTDKENCSYILFIDDVKLDDAGTVKCSATNAAGKTVVRADLEVEEKNVAPS 1216
Query: 539 YFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKK-GTGERNVLIFDLGRRY--- 706
+ R K+ S I +P + Y D G +RNV I+ G Y
Sbjct: 1217 FHGRQGRLRVKEGREAS--VYFEISGKPKPSVTWYKDDVVIGDEDRNVDIYSRGSSYYFT 1274
Query: 707 LRRVHPYHRGWY 742
+++ P +G Y
Sbjct: 1275 IKQARPEDKGTY 1286
>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 28.7 bits (61), Expect = 6.2
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = -1
Query: 489 SAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMSACTVASSNLRPMR 310
S F+F ST + +S +KV+ SPL + + P+ G S C V NL
Sbjct: 1108 SPAKFVFTSTGIVRASTRKVVPSPLRRSKVPPTVPAQRLFNGDRVESICNV--QNLSRCP 1165
Query: 309 RLASNIVL 286
++++ VL
Sbjct: 1166 KISNATVL 1173
>SB_24060| Best HMM Match : GED (HMM E-Value=0.52)
Length = 297
Score = 28.7 bits (61), Expect = 6.2
Identities = 24/91 (26%), Positives = 40/91 (43%)
Frame = -3
Query: 715 TSKVPPPEVKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTCIFCGLSLRVIEVR 536
T V PE K + + ++N + + EN+++ T IFCG + I +R
Sbjct: 36 TENVWKPEEFKKMMRTDAVPINLQLNNIVQQQIARNRENLRSLFKTIIFCGKN--NIPLR 93
Query: 535 GNRDNCILHSFAKISFGSFLHFRKHHGTDFL 443
G RD+ ++ +F + L FR G L
Sbjct: 94 GLRDSDPTNAALAGNFQALLEFRVDSGDQIL 124
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,437,890
Number of Sequences: 59808
Number of extensions: 600311
Number of successful extensions: 1868
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1864
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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